RegulonDB RegulonDB 10.9: Gene Form
   

ybgU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

gltA sdhC ybgU ybgV sdhD CRP ArcA ArcA ArcA Fur CRP IHF ArcA ArcA ArcA terminator sdhDp2 sdhDp2 sdhCp sdhCp gltAp1 gltAp1 TSS_839 TSS_839 gltAp2 gltAp2

Gene      
Name: ybgU    Texpresso search in the literature
Synonym(s): ECK4592, G0-16730, b4735
Genome position(nucleotides): 754674 <-- 754781 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
34.26


Product      
Name: protein YbgU
Synonym(s): YbgU
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 3.827
Isoelectric point: 9.399
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4412
UNIPROT:
P0DPN5


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_839 754683 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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