RegulonDB RegulonDB 10.10: Gene Form
   

ykgV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intF yagM yagN ykgV anti-terminator terminator yagNp4 yagNp4 yagNp5 yagNp5 yagNp3 yagNp3 yagNp8 yagNp8 TSS_474 (cluster) TSS_474 (cluster) yagLp7 yagLp7

Gene      
Name: ykgV    Texpresso search in the literature
Synonym(s): ECK4586, G0-16724, b4729
Genome position(nucleotides): 294918 <-- 295142 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 40.89


Product      
Name: CP4-6 prophage; protein YkgV
Synonym(s): YkgV
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 8.638
Isoelectric point: 10.058
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4406
INTERPRO:
 IPR009061
INTERPRO:
 IPR018247
UNIPROT:
 P0DPM9


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yagLp7 294031 reverse nd [ICWHO] [1]
  promoter TSS_474 (cluster) 295620 reverse nd [RS-EPT-CBR] [2]
  promoter yagNp8 295656 reverse nd [ICWHO] [1]
  promoter yagNp3 295660 reverse nd [ICWHO] [1]
  promoter yagNp5 295663 reverse nd [ICWHO] [1]
  promoter yagNp4 295671 reverse nd [ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RegulonDB