RegulonDB RegulonDB 10.10: Gene Form
   

yabR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ilvI leuO yabR Lrp Lrp Lrp Lrp Lrp Lrp ppGpp terminator anti-terminator anti-anti-terminator TSS_151 TSS_151 TSS_150 TSS_150 ilvIHp1 ilvIHp1 TSS_149 TSS_149 ilvIp2 ilvIp2 ilvIp3 ilvIp3 ilvIp4 ilvIp4

Gene      
Name: yabR    Texpresso search in the literature
Synonym(s): ECK4583, G0-16721, b4726
Genome position(nucleotides): 85467 <-- 85511 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 31.11


Product      
Name: protein YabR
Synonym(s): YabR
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 1.758
Isoelectric point: 10.891
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4403
UNIPROT:
 P0DPM5


Operon      
Name: yabR         
Operon arrangement:
Transcription unit        Promoter
yabR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_149 85599 forward nd [RS-EPT-CBR] [1]
  promoter TSS_150 86542 forward nd [RS-EPT-CBR] [1]
  promoter TSS_151 86559 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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