RegulonDB RegulonDB 11.0: Gene Form
   

baxL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

malS xylR bax baxL MalT MalT MalT PhoP CRP Qin prophage;  DicF terminator anti-terminator anti-anti-terminator malSp malSp TSS_4172 TSS_4172 baxp7 baxp7 baxp5 baxp5 TSS_4171 TSS_4171

Gene      
Name: baxL    Texpresso search in the literature
Synonym(s): ECK4651, G0-17040, b4794
Genome position(nucleotides): 3737177 <-- 3737203
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.44


Product      
Name: putative translational regulatory protein BaxL
Synonym(s): BaxL
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 0.951
Isoelectric point: 4.19
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation
Gene Ontology Terms (GO)  
biological_process GO:0006417 - regulation of translation
GO:0048523 - negative regulation of cellular process
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Weaver J., et al., 2019
External database links:  
ECOCYC:
MONOMER0-4506
UNIPROT:
P0DSH2


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4171 3736974 reverse nd [RS-EPT-CBR] [2]
  promoter baxp5 3737221 reverse nd [ICWHO] [3]
  promoter baxp7 3737234 reverse nd [ICWHO] [3]
  promoter TSS_4172 3737240 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Weaver J., Mohammad F., Buskirk AR., Storz G., 2019, Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes., MBio 10(2)

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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