RegulonDB RegulonDB 11.1: Gene Form
   

yhgO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glgB asd yhgO yhgP glgX PhoP TSS_4052 TSS_4052 TSS_4051 TSS_4051 TSS_4050 TSS_4050 glgBp glgBp TSS_4049 TSS_4049 TSS_4048 TSS_4048 TSS_4047 TSS_4047 TSS_4046 TSS_4046 TSS_4045 TSS_4045 TSS_4044 TSS_4044 glgXp3 glgXp3

Gene      
Name: yhgO    Texpresso search in the literature
Synonym(s): ECK4645, G0-17034, b4788
Genome position(nucleotides): 3573660 <-- 3573701
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 33.33


Product      
Name: protein YhgO
Synonym(s): YhgO
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 1.576
Isoelectric point: 9.341
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4500
UNIPROT:
 P0DSG6


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter glgXp3 3571419 reverse nd [COMP-AINF] [1]
  promoter TSS_4044 3571888 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4045 3572075 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4046 3572170 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4047 3572429 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4048 3572468 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4049 3572510 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4050 3574025 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4051 3574508 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4052 3574660 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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