RegulonDB RegulonDB 10.9: Gene Form
   

yljB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clpS cspD yljB MqsA CRP CRP PhoP MqsA ppGpp terminator TSS_1039 TSS_1039 TSS_1038 TSS_1038 clpAp3 clpAp3 clpAp2 clpAp2 TSS_1037 TSS_1037 clpAp1 clpAp1 TSS_1036 TSS_1036 TSS_1035 (cluster) TSS_1035 (cluster) TSS_1034 (cluster) TSS_1034 (cluster) TSS_1033 (cluster) TSS_1033 (cluster) clpSp7 clpSp7 TSS_1032 TSS_1032 TSS_1031 (cluster) TSS_1031 (cluster) TSS_1030 TSS_1030 clpSp clpSp clpSp6 clpSp6 cspDp cspDp TSS_1029 TSS_1029

Gene      
Name: yljB    Texpresso search in the literature
Synonym(s): ECK4627, G0-17016, b4770
Genome position(nucleotides): 922740 --> 922814 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.67


Product      
Name: protein YljB
Synonym(s): YljB
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.707
Isoelectric point: 4.19
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4482
UNIPROT:
P0DSE8


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1029 922660 forward nd [RS-EPT-CBR] [1]
  promoter clpSp6 922750 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1030 922827 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1031 (cluster) 922831 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1032 922847 forward nd [RS-EPT-CBR] [1]
  promoter clpSp7 922912 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_1033 (cluster) 923059 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1034 (cluster) 923062 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1035 (cluster) 923067 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1036 923070 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1037 923091 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1038 923211 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1039 923214 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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