RegulonDB RegulonDB 10.9: Gene Form
   

speFL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

speF kdpE ybfK speFL potE kdpD potEp1 potEp1

Gene      
Name: speFL    Texpresso search in the literature
Synonym(s): ECK4660, G0-17074, b4803
Genome position(nucleotides): 720718 <-- 720822 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.86


Product      
Name: leader peptide SpeFL
Synonym(s): SpeFL
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 4.249
Isoelectric point: 12.34
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation
Gene Ontology Terms (GO)  
molecular_function GO:0003723 - RNA binding
GO:0019843 - rRNA binding
biological_process GO:0006417 - regulation of translation
GO:0031556 - transcriptional attenuation by ribosome
GO:0006448 - regulation of translational elongation
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Herrero Del Valle A., et al., 2020
External database links:  
ECOCYC:
MONOMER0-4532
PDB:
6TVB
PDB:
6TC3
UNIPROT:
P0DTV7


Operon      
Name: speFLF-potE         
Operon arrangement:
Transcription unit        Promoter
speF-potE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter potEp1 718344 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Herrero Del Valle A., Seip B., Cervera-Marzal I., Sacheau G., Seefeldt AC., Innis CA., 2020, Ornithine capture by a translating ribosome controls bacterial polyamine synthesis., Nat Microbiol 5(4):554-561

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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