RegulonDB RegulonDB 11.1: Gene Form
   

raiZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

raiA unknown raiZ pheL CRP Cis-reg; leader anti-anti-terminator terminator TSS_2939 TSS_2939 pheLp pheLp TSS_2938 (cluster) TSS_2938 (cluster) TSS_2937 TSS_2937 TSS_2936 (cluster) TSS_2936 (cluster) TSS_2935 TSS_2935 TSS_2934 (cluster) TSS_2934 (cluster) TSS_2933 TSS_2933 TSS_2932 TSS_2932 TSS_2931 (cluster) TSS_2931 (cluster) raiAp raiAp TSS_2930 TSS_2930

Gene      
Name: raiZ    Texpresso search in the literature
Synonym(s): ECK4662, G0-17078, b4805
Genome position(nucleotides): 2737381 --> 2737542
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.38


Product      
Name: small RNA RaiZ
Synonym(s): RaiZ
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
RNA0-407


Operon      
Name: raiAZ         
Operon arrangement:
Transcription unit        Promoter
raiAZ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2918 2736248 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2919 2736286 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2920 (cluster) 2736329 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2921 (cluster) 2736345 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2922 2736549 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2923 2736555 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2924 2736559 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2925 2736561 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2926 2736565 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2927 2736586 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2928 2736612 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2929 2736658 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2930 2737089 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2931 (cluster) 2737123 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2932 2737131 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2933 2737251 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2934 (cluster) 2737256 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2935 2737260 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2936 (cluster) 2737373 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2937 2737381 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2938 (cluster) 2737413 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2939 2737580 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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