RegulonDB RegulonDB 11.1: Gene Form
   

ftsO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ftsI murE ftsL ftsO rsmH murF TSS_160 TSS_160 TSS_159 TSS_159

Gene      
Name: ftsO    Texpresso search in the literature
Synonym(s): ECK4667, G0-17085, b4810
Genome position(nucleotides): 92485 --> 92658
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.57


Product      
Name: small regulatory RNA FtsO
Synonym(s): FtsO
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
molecular_function GO:0061980 - regulatory RNA binding
biological_process GO:0050779 - RNA destabilization
Note(s): Note(s): ...[more].
Evidence: [EXP-IMP] Inferred from mutant phenotype
Reference(s): [1] Adams PP., et al., 2021
External database links:  
ECOCYC:
RNA0-413


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_159 92485 forward nd [RS-EPT-CBR] [2]
  promoter TSS_160 94608 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Adams PP., Baniulyte G., Esnault C., Chegireddy K., Singh N., Monge M., Dale RK., Storz G., Wade JT., 2021, Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping., Elife 10

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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