RegulonDB RegulonDB 11.1: Gene Form
   

fliX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fliC fliA fliX NsrR IHF IHF FlhDC FlhDC CsgD NsrR anti-anti-terminator anti-terminator terminator TSS_2263 TSS_2263 TSS_2262 TSS_2262 TSS_2261 TSS_2261 fliAp1 fliAp1 fliAp2 fliAp2 TSS_2259 TSS_2259 TSS_2258 TSS_2258

Gene      
Name: fliX    Texpresso search in the literature
Synonym(s): ECK4684, G0-17102, b4827
Genome position(nucleotides): 2001912 <-- 2002106
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.21


Product      
Name: small RNA FliX
Synonym(s): FliX
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 RNA0-420


Operon      
Name: fliCX         
Operon arrangement:
Transcription unit        Promoter
fliC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2258 2001544 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2259 2001807 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2261 2002392 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2262 2002401 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2263 2003300 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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