RegulonDB RegulonDB 11.2: Gene Form
   

motR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

motA flhC flhD motR motB CpxR anti-anti-terminator anti-terminator terminator flhCp3 flhCp3 motRp motRp TSS_2231 TSS_2231 TSS_2230 TSS_2230

Gene      
Name: motR    Texpresso search in the literature
Synonym(s): ECK4685, G0-17103, b4828
Genome position(nucleotides): 1977208 <-- 1977302
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.42


Product      
Name: small RNA MotR
Synonym(s): MotR
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 RNA0-421


Operon      
Name: motRAB-cheAW         
Operon arrangement:
Transcription unit        Promoter
motRAB-cheAW


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2230 1976720 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2231 1977300 reverse nd [RS-EPT-CBR] [1]
  promoter flhCp3 1977932 reverse nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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