RegulonDB RegulonDB 10.10: Gene Form
   

rplO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

secY rplO rpmD TSS_3728 (cluster) TSS_3728 (cluster) TSS_3727 TSS_3727 TSS_3726 TSS_3726 TSS_3725 TSS_3725 TSS_3724 TSS_3724 TSS_3723 TSS_3723 TSS_3722 TSS_3722 TSS_3721 TSS_3721 TSS_3720 (cluster) TSS_3720 (cluster) TSS_3719 TSS_3719 TSS_3718 (cluster) TSS_3718 (cluster) TSS_3717 TSS_3717 TSS_3716 TSS_3716 TSS_3715 (cluster) TSS_3715 (cluster) TSS_3714 TSS_3714 TSS_3713 TSS_3713 TSS_3712 TSS_3712 TSS_3711 TSS_3711 TSS_3710 TSS_3710 TSS_3709 (cluster) TSS_3709 (cluster) TSS_3708 TSS_3708 TSS_3707 TSS_3707 TSS_3706 (cluster) TSS_3706 (cluster) TSS_3705 (cluster) TSS_3705 (cluster) TSS_3704 TSS_3704 TSS_3703 TSS_3703 TSS_3702 (cluster) TSS_3702 (cluster) TSS_3701 TSS_3701 TSS_3700 TSS_3700 TSS_3699 TSS_3699 TSS_3698 (cluster) TSS_3698 (cluster) TSS_3697 TSS_3697 TSS_3696 TSS_3696 TSS_3695 (cluster) TSS_3695 (cluster) TSS_3694 (cluster) TSS_3694 (cluster) TSS_3693 TSS_3693 TSS_3692 TSS_3692 TSS_3691 (cluster) TSS_3691 (cluster) TSS_3690 TSS_3690 TSS_3689 TSS_3689 TSS_3688 TSS_3688 TSS_3687 (cluster) TSS_3687 (cluster) TSS_3686 TSS_3686 TSS_3685 (cluster) TSS_3685 (cluster) TSS_3684 (cluster) TSS_3684 (cluster) TSS_3683 TSS_3683 TSS_3682 TSS_3682 TSS_3681 (cluster) TSS_3681 (cluster) TSS_3680 TSS_3680 TSS_3679 (cluster) TSS_3679 (cluster) TSS_3678 TSS_3678 TSS_3677 (cluster) TSS_3677 (cluster)

Gene      
Name: rplO    Texpresso search in the literature
Synonym(s): ECK3288, EG10876, b3301
Genome position(nucleotides): 3444105 <-- 3444539 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.56
External database links:  
ASAP:
ABE-0010819
CGSC:
251
ECHOBASE:
EB0869
ECOLIHUB:
rplO
OU-MICROARRAY:
b3301
STRING:
511145.b3301
COLOMBOS: rplO


Product      
Name: 50S ribosomal subunit protein L15
Synonym(s): RplO
Sequence: Get amino acid sequence Fasta Format
Cellular location: ribosome
Molecular weight: 14.98
Isoelectric point: 11.784
Motif(s):
 
Type Positions Sequence
28 -> 143 GKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
cellular_component GO:0005840 - ribosome
GO:0015934 - large ribosomal subunit
GO:0022625 - cytosolic large ribosomal subunit
molecular_function GO:0003735 - structural constituent of ribosome
GO:0005515 - protein binding
GO:0003723 - RNA binding
GO:0019843 - rRNA binding
biological_process GO:0006412 - translation
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-10752N
ECOCYC:
EG10876-MONOMER
ECOLIWIKI:
b3301
INTERPRO:
IPR001196
INTERPRO:
IPR005749
INTERPRO:
IPR036227
INTERPRO:
IPR021131
INTERPRO:
IPR030878
MODBASE:
P02413
PANTHER:
PTHR12934
PDB:
1ML5
PDB:
2J28
PDB:
2RDO
PDB:
3BBX
PDB:
3J5L
PDB:
3J7Z
PDB:
3J8G
PDB:
3J9Y
PDB:
3J9Z
PDB:
3JA1
PDB:
3JBU
PDB:
3JBV
PDB:
3JCD
PDB:
3JCE
PDB:
3JCJ
PDB:
3JCN
PDB:
4CSU
PDB:
4U1U
PDB:
4U1V
PDB:
4U20
PDB:
4U24
PDB:
4U25
PDB:
4U26
PDB:
4U27
PDB:
4UY8
PDB:
4V47
PDB:
4V48
PDB:
4V4H
PDB:
4V4Q
PDB:
4V4V
PDB:
4V4W
PDB:
4V50
PDB:
4V52
PDB:
4V53
PDB:
4V54
PDB:
4V55
PDB:
4V56
PDB:
4V57
PDB:
4V5B
PDB:
4V5H
PDB:
4V5Y
PDB:
4V64
PDB:
4V65
PDB:
4V66
PDB:
4V69
PDB:
4V6C
PDB:
4V6D
PDB:
4V6E
PDB:
4V6K
PDB:
4V6L
PDB:
4V6M
PDB:
4V6N
PDB:
4V6O
PDB:
4V6P
PDB:
4V6Q
PDB:
4V6R
PDB:
4V6S
PDB:
4V6T
PDB:
4V6V
PDB:
4V6Y
PDB:
4V6Z
PDB:
4V70
PDB:
4V71
PDB:
4V72
PDB:
4V73
PDB:
4V74
PDB:
4V75
PDB:
4V76
PDB:
4V77
PDB:
4V78
PDB:
4V79
PDB:
4V7A
PDB:
4V7B
PDB:
4V7C
PDB:
4V7D
PDB:
4V7I
PDB:
4V7S
PDB:
4V7T
PDB:
4V7U
PDB:
4V7V
PDB:
4V85
PDB:
4V89
PDB:
4V9C
PDB:
4V9D
PDB:
4V9O
PDB:
4V9P
PDB:
4WF1
PDB:
4WOI
PDB:
4WWW
PDB:
4YBB
PDB:
5ADY
PDB:
5AFI
PDB:
5AKA
PDB:
5GAD
PDB:
5GAE
PDB:
5GAF
PDB:
5GAG
PDB:
5GAH
PDB:
5H5U
PDB:
5IQR
PDB:
5IT8
PDB:
5J5B
PDB:
5J7L
PDB:
5J88
PDB:
5J8A
PDB:
5J91
PDB:
5JC9
PDB:
5JTE
PDB:
5JU8
PDB:
5KCR
PDB:
5KCS
PDB:
5KPS
PDB:
5KPV
PDB:
5KPW
PDB:
5KPX
PDB:
5L3P
PDB:
5LZA
PDB:
5LZB
PDB:
5LZC
PDB:
5LZD
PDB:
5LZE
PDB:
5LZF
PDB:
5MDV
PDB:
5MDW
PDB:
5MDY
PDB:
5MDZ
PDB:
5MGP
PDB:
5NCO
PDB:
5NP6
PDB:
5NWY
PDB:
5O2R
PDB:
5U4I
PDB:
5U9F
PDB:
5U9G
PDB:
5UYK
PDB:
5UYL
PDB:
5UYM
PDB:
5UYN
PDB:
5UYP
PDB:
5UYQ
PDB:
5WDT
PDB:
5WE4
PDB:
5WE6
PDB:
5WFK
PDB:
6BU8
PDB:
6BY1
PDB:
6C4I
PDB:
6DNC
PDB:
6ENF
PDB:
6ENJ
PDB:
6ENU
PDB:
6GBZ
PDB:
6GC0
PDB:
6GC4
PDB:
6GC6
PDB:
6GC7
PDB:
6GC8
PDB:
6GWT
PDB:
6GXM
PDB:
6GXN
PDB:
6GXO
PDB:
6GXP
PDB:
6H4N
PDB:
6H58
PDB:
6HRM
PDB:
6I0Y
PDB:
6I7V
PDB:
6O9J
PDB:
6O9K
PDB:
6OFX
PDB:
6OG7
PDB:
6ORE
PDB:
6ORL
PDB:
6OST
PDB:
6OT3
PDB:
6OUO
PDB:
6Q97
PDB:
6Q98
PDB:
6Q9A
PDB:
6QUL
PDB:
6S0K
PDB:
6SZS
PDB:
6TBV
PDB:
6TC3
PFAM:
PF00828
PRIDE:
P02413
PRODB:
PRO_000023821
PROSITE:
PS00475
REFSEQ:
NP_417760
SMR:
P02413
UNIPROT:
P02413


Operon      
Name: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ         
Operon arrangement:
Transcription unit        Promoter
rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3677 (cluster) 3442845 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3678 3442853 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3679 (cluster) 3442861 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3680 3442874 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3681 (cluster) 3442902 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3682 3442924 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3683 3442927 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3684 (cluster) 3442931 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3685 (cluster) 3442939 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3686 3442946 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3687 (cluster) 3442950 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3688 3442952 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3689 3443130 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3690 3443181 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3691 (cluster) 3443248 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3692 3443251 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3693 3443264 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3694 (cluster) 3443307 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3695 (cluster) 3443351 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3696 3443608 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3697 3443611 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3698 (cluster) 3443618 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3699 3443627 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3700 3443728 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3701 3443964 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3702 (cluster) 3443970 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3703 3443983 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3704 3444065 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3705 (cluster) 3444077 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3706 (cluster) 3444080 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3707 3444086 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3708 3444089 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3709 (cluster) 3444093 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3710 3444097 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3711 3444116 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3712 3444233 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3713 3444262 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3714 3444279 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3715 (cluster) 3444289 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3716 3444332 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3717 3444337 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3718 (cluster) 3444340 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3719 3444345 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3720 (cluster) 3444352 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3721 3444474 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3722 3444481 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3723 3444485 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3724 3444497 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3725 3444499 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3726 3444507 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3727 3444510 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3728 (cluster) 3444704 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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