RegulonDB

RegulonDB RegulonDB 10.10: Gene Form

rpsH gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	rpsH
Synonym(s):	ECK3293, EG10907, b3306
Genome position(nucleotides):	3446153 <-- 3446545 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.13
External database links:

ASAP:	ABE-0010829
CGSC:	223
ECHOBASE:	EB0900
ECOLIHUB:	rpsH
OU-MICROARRAY:	b3306
STRING:	511145.b3306
COLOMBOS:	rpsH

Product

Name:

30S ribosomal subunit protein S8

Synonym(s):

RpsH

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

ribosome,cytosol

Molecular weight:

14.127

Isoelectric point:

10.014

Motif(s):

Type	Positions	Sequence
	5 -> 129	DPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV
	91 -> 91	E
	2 -> 130	SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
		2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
		3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
		6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol GO:0005840 - ribosome GO:0022627 - cytosolic small ribosomal subunit
	molecular_function	GO:0003735 - structural constituent of ribosome GO:0003723 - RNA binding GO:0019843 - rRNA binding
	biological_process	GO:0006412 - translation GO:0006417 - regulation of translation GO:0043488 - regulation of mRNA stability GO:0000028 - ribosomal small subunit assembly

Note(s):

Note(s): ...[more].

Reference(s):

[1] Lux B., et al., 1977
[2] Muller R., et al., 1979
[3] Osterberg R., et al., 1978

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

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INTERPRO:

MODBASE:

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REFSEQ:

SMR:

UNIPROT:

Operon

Name:

rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ

Operon arrangement:

Transcription unit	Promoter
rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ	rplNp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_3739	3445611	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3740	3445620	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3741	3445623	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3742 (cluster)	3445658	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3743 (cluster)	3445685	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3744 (cluster)	3445691	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3745	3445699	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3746	3445701	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3747	3445710	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3748	3445872	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3749 (cluster)	3446058	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3750	3446394	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3751	3446402	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3752	3446641	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3753	3446790	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3754 (cluster)	3446794	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3755 (cluster)	3446797	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3756	3446801	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3757	3446807	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3758	3446812	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3759 (cluster)	3446829	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3760 (cluster)	3446832	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3761 (cluster)	3446837	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3762 (cluster)	3446840	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3763	3446845	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3764	3446851	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3765	3446872	reverse	nd	[RS-EPT-CBR]	[4]
promoter	TSS_3766	3446880	reverse	nd	[RS-EPT-CBR]	[4]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Lux B., Gerard D., Laustriat G., 1977, Tyrosine fluorescence of S8 and S15 Escherichia coli ribosomal proteins., FEBS Lett 80(1):66-70
[2] Muller R., Garrett RA., Noller HF., 1979, The structure of the RNA binding site of ribosomal proteins S8 and S15., J Biol Chem 254(10):3873-8
[3] Osterberg R., Sjoberg B., 1978, Small-angle X-ray scattering study of the proteins S1, S8, S15, S16, S20 from Escherichia coli ribosomes., FEBS Lett 93(1):115-9
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RegulonDB