RegulonDB RegulonDB 10.10: Gene Form
   

rpmJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

secY rpsM rpmJ DksA-ppGpp DksA-ppGpp Cis-reg anti-anti-terminator anti-terminator terminator TSS_3710 TSS_3710 TSS_3709 (cluster) TSS_3709 (cluster) TSS_3708 TSS_3708 TSS_3707 TSS_3707 TSS_3706 (cluster) TSS_3706 (cluster) TSS_3705 (cluster) TSS_3705 (cluster) TSS_3704 TSS_3704 TSS_3703 TSS_3703 TSS_3702 (cluster) TSS_3702 (cluster) TSS_3701 TSS_3701 TSS_3700 TSS_3700 TSS_3699 TSS_3699 TSS_3698 (cluster) TSS_3698 (cluster) TSS_3697 TSS_3697 TSS_3696 TSS_3696 TSS_3695 (cluster) TSS_3695 (cluster) TSS_3694 (cluster) TSS_3694 (cluster) TSS_3693 TSS_3693 TSS_3692 TSS_3692 TSS_3691 (cluster) TSS_3691 (cluster) TSS_3690 TSS_3690 TSS_3689 TSS_3689 TSS_3688 TSS_3688 TSS_3687 (cluster) TSS_3687 (cluster) TSS_3686 TSS_3686 TSS_3685 (cluster) TSS_3685 (cluster) TSS_3684 (cluster) TSS_3684 (cluster) TSS_3683 TSS_3683 TSS_3682 TSS_3682 TSS_3681 (cluster) TSS_3681 (cluster) TSS_3680 TSS_3680 TSS_3679 (cluster) TSS_3679 (cluster) TSS_3678 TSS_3678 TSS_3677 (cluster) TSS_3677 (cluster) TSS_3676 (cluster) TSS_3676 (cluster) TSS_3675 (cluster) TSS_3675 (cluster) TSS_3674 (cluster) TSS_3674 (cluster) rpsMp2 rpsMp2 TSS_3672 (cluster) TSS_3672 (cluster) TSS_3671 TSS_3671 TSS_3670 (cluster) TSS_3670 (cluster) TSS_3669 TSS_3669 rpsMp1 rpsMp1 TSS_3668 TSS_3668 TSS_3667 (cluster) TSS_3667 (cluster) TSS_3666 TSS_3666 TSS_3665 (cluster) TSS_3665 (cluster) TSS_3664 TSS_3664 TSS_3663 (cluster) TSS_3663 (cluster) TSS_3662 (cluster) TSS_3662 (cluster) TSS_3661 (cluster) TSS_3661 (cluster)

Gene      
Name: rpmJ    Texpresso search in the literature
Synonym(s): ECK3286, EG11232, b3299, secX
Genome position(nucleotides): 3442618 <-- 3442734 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.86
External database links:  
ASAP:
ABE-0010812
CGSC:
17599
ECHOBASE:
EB1214
ECOLIHUB:
rpmJ
OU-MICROARRAY:
b3299
STRING:
511145.b3299
COLOMBOS: rpmJ


Product      
Name: 50S ribosomal subunit protein L36
Synonym(s): 50S ribosomal subunit protein B, RpmJ, SecX
Sequence: Get amino acid sequence Fasta Format
Cellular location: ribosome,cytosol
Molecular weight: 4.364
Isoelectric point: 11.418
Motif(s):
 
Type Positions Sequence
1 -> 38 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005840 - ribosome
GO:0022625 - cytosolic large ribosomal subunit
molecular_function GO:0003735 - structural constituent of ribosome
biological_process GO:0006412 - translation
Note(s): Note(s): ...[more].
Reference(s): [1] Ueguchi C., et al., 1989
[2] Wittmann-Liebold B., et al., 1995
External database links:  
ECOCYC:
EG11232-MONOMER
ECOLIWIKI:
b3299
INTERPRO:
IPR000473
INTERPRO:
IPR035977
PANTHER:
PTHR42888
PDB:
2J28
PDB:
2RDO
PDB:
3BBX
PDB:
3J5L
PDB:
3J7Z
PDB:
3J8G
PDB:
3J9Y
PDB:
3J9Z
PDB:
3JA1
PDB:
3JBU
PDB:
3JBV
PDB:
3JCD
PDB:
3JCE
PDB:
3JCJ
PDB:
3JCN
PDB:
4CSU
PDB:
4U1U
PDB:
4U1V
PDB:
4U20
PDB:
4U24
PDB:
4U25
PDB:
4U26
PDB:
4U27
PDB:
4UY8
PDB:
4V47
PDB:
4V48
PDB:
4V4H
PDB:
4V4Q
PDB:
4V50
PDB:
4V52
PDB:
4V53
PDB:
4V54
PDB:
4V55
PDB:
4V56
PDB:
4V57
PDB:
4V5B
PDB:
4V5H
PDB:
4V5Y
PDB:
4V64
PDB:
4V65
PDB:
4V66
PDB:
4V69
PDB:
4V6C
PDB:
4V6D
PDB:
4V6E
PDB:
4V6K
PDB:
4V6L
PDB:
4V6M
PDB:
4V6N
PDB:
4V6O
PDB:
4V6P
PDB:
4V6Q
PDB:
4V6R
PDB:
4V6S
PDB:
4V6T
PDB:
4V6V
PDB:
4V6Y
PDB:
4V6Z
PDB:
4V70
PDB:
4V71
PDB:
4V72
PDB:
4V73
PDB:
4V74
PDB:
4V75
PDB:
4V76
PDB:
4V77
PDB:
4V78
PDB:
4V79
PDB:
4V7A
PDB:
4V7B
PDB:
4V7C
PDB:
4V7D
PDB:
4V7I
PDB:
4V7S
PDB:
4V7T
PDB:
4V7U
PDB:
4V7V
PDB:
4V85
PDB:
4V89
PDB:
4V9C
PDB:
4V9D
PDB:
4V9O
PDB:
4V9P
PDB:
4WF1
PDB:
4WOI
PDB:
4WWW
PDB:
4YBB
PDB:
5ADY
PDB:
5AFI
PDB:
5AKA
PDB:
5GAD
PDB:
5GAE
PDB:
5GAF
PDB:
5GAG
PDB:
5GAH
PDB:
5H5U
PDB:
5IQR
PDB:
5IT8
PDB:
5J5B
PDB:
5J7L
PDB:
5J88
PDB:
5J8A
PDB:
5J91
PDB:
5JC9
PDB:
5JTE
PDB:
5JU8
PDB:
5KCR
PDB:
5KCS
PDB:
5KPS
PDB:
5KPV
PDB:
5KPW
PDB:
5KPX
PDB:
5L3P
PDB:
5LZA
PDB:
5LZB
PDB:
5LZC
PDB:
5LZD
PDB:
5LZE
PDB:
5LZF
PDB:
5MDV
PDB:
5MDW
PDB:
5MDY
PDB:
5MDZ
PDB:
5MGP
PDB:
5NCO
PDB:
5NP6
PDB:
5NWY
PDB:
5O2R
PDB:
5U4I
PDB:
5U9F
PDB:
5U9G
PDB:
5UYK
PDB:
5UYL
PDB:
5UYM
PDB:
5UYN
PDB:
5UYP
PDB:
5UYQ
PDB:
5WDT
PDB:
5WE4
PDB:
5WE6
PDB:
5WFK
PDB:
6BU8
PDB:
6BY1
PDB:
6C4I
PDB:
6DNC
PDB:
6ENF
PDB:
6ENJ
PDB:
6ENU
PDB:
6GWT
PDB:
6GXM
PDB:
6GXN
PDB:
6GXO
PDB:
6GXP
PDB:
6H4N
PDB:
6H58
PDB:
6HRM
PDB:
6I0Y
PDB:
6O9J
PDB:
6O9K
PDB:
6OFX
PDB:
6OG7
PDB:
6ORE
PDB:
6OST
PDB:
6OT3
PDB:
6OUO
PDB:
6Q98
PDB:
6Q9A
PDB:
6QUL
PDB:
6S0K
PDB:
6SZS
PDB:
6TBV
PDB:
6TC3
PFAM:
PF00444
PRIDE:
P0A7Q6
PRODB:
PRO_000023842
PROSITE:
PS00828
REFSEQ:
NP_417758
SMR:
P0A7Q6
UNIPROT:
P0A7Q6


Operon      
Name: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ         
Operon arrangement:
Transcription unit        Promoter
rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3661 (cluster) 3442116 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3662 (cluster) 3442120 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3663 (cluster) 3442126 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3664 3442245 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3665 (cluster) 3442346 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3666 3442433 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3667 (cluster) 3442437 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3668 3442439 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3669 3442518 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3670 (cluster) 3442552 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3671 3442554 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3672 (cluster) 3442559 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3674 (cluster) 3442593 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3675 (cluster) 3442600 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3676 (cluster) 3442604 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3677 (cluster) 3442845 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3678 3442853 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3679 (cluster) 3442861 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3680 3442874 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3681 (cluster) 3442902 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3682 3442924 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3683 3442927 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3684 (cluster) 3442931 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3685 (cluster) 3442939 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3686 3442946 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3687 (cluster) 3442950 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3688 3442952 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3689 3443130 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3690 3443181 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3691 (cluster) 3443248 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3692 3443251 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3693 3443264 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3694 (cluster) 3443307 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3695 (cluster) 3443351 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3696 3443608 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3697 3443611 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3698 (cluster) 3443618 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3699 3443627 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3700 3443728 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3701 3443964 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3702 (cluster) 3443970 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3703 3443983 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3704 3444065 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3705 (cluster) 3444077 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3706 (cluster) 3444080 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3707 3444086 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3708 3444089 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3709 (cluster) 3444093 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3710 3444097 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Ueguchi C., Wittekind M., Nomura M., Akiyama Y., Ito K., 1989, The secY-rpmJ region of the spc ribosomal protein operon in Escherichia coli: structural alterations affecting secY expression., Mol Gen Genet 217(1):1-5

 [2] Wittmann-Liebold B., Uhlein M., Urlaub H., Muller EC., Otto A., Bischof O., 1995, Structural and functional implications in the eubacterial ribosome as revealed by protein-rRNA and antibiotic contact sites., Biochem Cell Biol 73(11-12):1187-97

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB