RegulonDB RegulonDB 10.9: Gene Form
   

yabP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

djlA rluA yabP yabQ terminator TSS_115 TSS_115 TSS_114 TSS_114

Gene      
Name: yabP    Texpresso search in the literature
Synonym(s): ECK0057, EG12610, b0056, b4659
Genome position(nucleotides): 58474 --> 59124 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.16
External database links:  
ASAP:
 ABE-0285120
ASAP:
 ABE-0000192
ECHOBASE:
 EB2494
ECOLIHUB:
 yabP
OU-MICROARRAY:
 b0056
STRING:
 316407.85674305
COLOMBOS: yabP


Product      
Name: putative uncharacterized protein YabP
Synonym(s): YabP
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 24.791
Isoelectric point: 9.867
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 EG12610-MONOMER
ECOLIWIKI:
 b0056
PRIDE:
 P39220
REFSEQ:
 NP_414598
SMR:
 P39220
UNIPROT:
 P39220


Operon      
Name: yabPQ         
Operon arrangement:
Transcription unit        Promoter
yabPQ


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_114 59042 forward nd [RS-EPT-CBR] [1]
  promoter TSS_115 59069 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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