RegulonDB RegulonDB 11.1: Gene Form
   

yabQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

djlA rluA yabP yabQ terminator TSS_115 TSS_115 TSS_114 TSS_114

Gene      
Name: yabQ    Texpresso search in the literature
Synonym(s): ECK0058, EG12611, b0057, b4659
Genome position(nucleotides): 59121 --> 59279
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 33.96
External database links:  
ASAP:
 ABE-0000194
ASAP:
 ABE-0285120
ECHOBASE:
 EB2495
ECOLIHUB:
 yabQ
OU-MICROARRAY:
 b0057
STRING:
 316407.21321938
COLOMBOS: yabQ


Product      
Name: protein YabQ
Synonym(s): YabQ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 5.737
Isoelectric point: 6.751
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P39221
ECOCYC:
 EG12611-MONOMER
ECOLIWIKI:
 b0057
PRIDE:
 P39221
REFSEQ:
 NP_414599
UNIPROT:
 P39221


Operon      
Name: yabPQ         
Operon arrangement:
Transcription unit        Promoter
yabPQ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_114 59042 forward nd [RS-EPT-CBR] [1]
  promoter TSS_115 59069 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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