RegulonDB

Gene
Name:	feoC
Synonym(s):	ECK3397, EG12933, b3410, yhgG
Genome position(nucleotides):	3542728 --> 3542964 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.85
External database links:

ASAP:	ABE-0011130
ECHOBASE:	EB2769
ECOLIHUB:	feoC
OU-MICROARRAY:	b3410
STRING:	511145.b3410
COLOMBOS:	feoC

Product

Name:

ferrous iron transport protein FeoC

Synonym(s):

FeoC, YhgG

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

8.66

Isoelectric point:

7.922

Motif(s):

Type	Positions	Sequence
	3 -> 69	SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKA

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		4 - transport
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0046872 - metal ion binding GO:0051536 - iron-sulfur cluster binding GO:0051539 - 4 iron, 4 sulfur cluster binding GO:0005506 - iron ion binding
	biological_process	GO:0033212 - iron import into cell

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

PDB:

PFAM:

PRIDE:

PRODB:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

feoABC

Operon arrangement:

Transcription unit	Promoter
feoABC	feoAp

Transcriptional Regulation
	Display Regulation
Activated by:	OmpR, FNR
Repressed by:	Fur
Undetermined regulation	NagC

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_4007	3540444	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_4008 (cluster)	3540462	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_4009	3540588	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_4010	3542195	forward	nd	[RS-EPT-CBR]	[1]
promoter	yhgAp6	3543147	forward	nd	[ICWHO]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78