RegulonDB RegulonDB 11.1: Gene Form
   

yciY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clsA kch yciY TSS_1682 (cluster) TSS_1682 (cluster) clsAp clsAp TSS_1681 TSS_1681 TSS_1680 TSS_1680 TSS_1679 TSS_1679 TSS_1678 TSS_1678 TSS_1677 TSS_1677 yciUp4 yciUp4 yciUp5 yciUp5 yciUp6 yciUp6 TSS_1676 TSS_1676

Gene      
Name: yciY    Texpresso search in the literature
Synonym(s): ECK4405, G0-8891, b4595
Genome position(nucleotides): 1308788 --> 1308961
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.57
External database links:  
ECOLIHUB:
 yciY
STRING:
 511145.b4595
COLOMBOS: yciY


Product      
Name: uncharacterized protein YciY
Synonym(s): YciY
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 7.102
Isoelectric point: 12.705
Motif(s):
 
Type Positions Sequence Comment
1 -> 25 MKRSRTEVGRWRMQRQASRRKSRWL UniProt: Disordered; Sequence Annotation Type: region of interest.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 A5A613
ECOCYC:
 MONOMER0-765
ECOLIWIKI:
 b4595
PRIDE:
 A5A613
REFSEQ:
 YP_001165316
UNIPROT:
 A5A613


Operon      
Name: yciY         
Operon arrangement:
Transcription unit        Promoter
yciY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1676 1307286 reverse nd [RS-EPT-CBR] [1]
  promoter yciUp6 1307349 reverse nd [COMP-AINF] [2]
  promoter yciUp5 1307352 reverse nd [COMP-AINF] [2]
  promoter yciUp4 1307359 reverse nd [COMP-AINF] [2]
  promoter TSS_1677 1307454 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1678 1307894 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1679 1307905 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1680 1307924 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1681 1308634 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1682 (cluster) 1308761 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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