RegulonDB RegulonDB 11.1: Gene Form
   

ybdG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pheP ybdG nfsB TSS_720 TSS_720

Gene      
Name: ybdG    Texpresso search in the literature
Synonym(s): ECK0569, G6323, b0577
Genome position(nucleotides): 603416 <-- 604663
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.52
External database links:  
ASAP:
 ABE-0001978
ECHOBASE:
 EB2504
ECOLIHUB:
 ybdG
OU-MICROARRAY:
 b0577
STRING:
 511145.b0577
COLOMBOS: ybdG


Product      
Name: miniconductance mechanosensitive channel YbdG
Synonym(s): YbdG
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 46.603
Isoelectric point: 8.448
Motif(s):
 
Type Positions Sequence Comment
25 -> 45 IFGIIFLTAVVVHIILHWVVL UniProt: Helical.
68 -> 88 LFHRLAFTLQGIIVNIQAVFW UniProt: Helical.
105 -> 125 LWIMMYALLSVFSLLDVILNL UniProt: Helical.
142 -> 396 QGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLR
149 -> 169 AILVGILMISLLIGQSPAILI UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.1 - Channel-type Transporters
  5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0008381 - mechanosensitive ion channel activity
GO:0042802 - identical protein binding
biological_process GO:0006811 - ion transport
GO:0006970 - response to osmotic stress
GO:0034220 - ion transmembrane transport
GO:0055085 - transmembrane transport
GO:0071470 - cellular response to osmotic stress
External database links:  
ALPHAFOLD:
 P0AAT4
DIP:
 DIP-51225N
ECOCYC:
 G6323-MONOMER
ECOLIWIKI:
 b0577
INTERPRO:
 IPR011066
INTERPRO:
 IPR006685
INTERPRO:
 IPR030192
INTERPRO:
 IPR010920
MODBASE:
 P0AAT4
PANTHER:
 PTHR30414
PFAM:
 PF00924
PRIDE:
 P0AAT4
REFSEQ:
 NP_415109
UNIPROT:
 P0AAT4


Operon      
Name: ybdG         
Operon arrangement:
Transcription unit        Promoter
ybdG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_720 604684 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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