RegulonDB RegulonDB 11.1: Gene Form
   

ybfP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pgm potE ybfG ybfP ybfI speF terminator anti-terminator anti-anti-terminator ybfHp ybfHp

Gene      
Name: ybfP    Texpresso search in the literature
Synonym(s): ECK0677, G6374, b0689
Genome position(nucleotides): 715412 --> 715906
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 45.45
External database links:  
ASAP:
 ABE-0002350
ECHOBASE:
 EB3910
ECOLIHUB:
 ybfP
OU-MICROARRAY:
 b0689
STRING:
 511145.b0689
COLOMBOS: ybfP


Product      
Name: lipoprotein YbfP
Synonym(s): YbfP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,periplasmic space
Molecular weight: 18.282
Isoelectric point: 8.492
Motif(s):
 
Type Positions Sequence Comment
1 -> 22 MKTNRSLVVIVSLITATLLLTA
23 -> 164 CAQPEQSSLAGDWLLTPKDKTRGLTGSIAVNIAPFRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPGWQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKAINTH UniProt: Uncharacterized lipoprotein YbfP.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Rao S., et al., 2020
External database links:  
ALPHAFOLD:
 P75737
ECOCYC:
 G6374-MONOMER
ECOLIWIKI:
 b0689
PRIDE:
 P75737
PROSITE:
 PS51257
REFSEQ:
 NP_415215
SMR:
 P75737
UNIPROT:
 P75737


Operon      
Name: ybfP         
Operon arrangement:
Transcription unit        Promoter
ybfP


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Rao S., Bates GT., Matthews CR., Newport TD., Vickery ON., Stansfeld PJ., 2020, Characterizing Membrane Association and Periplasmic Transfer of Bacterial Lipoproteins through Molecular Dynamics Simulations., Structure 28(4):475-487.e3

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