RegulonDB RegulonDB 11.1: Gene Form
   

ybfO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybfO ybfC ybfB ybfQ TSS_831 TSS_831

Gene      
Name: ybfO    Texpresso search in the literature
Synonym(s): ECK0691, G6376, b0703
Type: Pseudo Gene
Genome position(nucleotides): 734220 --> 735653
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.6
External database links:  
ASAP:
 ABE-0002402
ECHOBASE:
 EB3425
ECOLIHUB:
 ybfO
OU-MICROARRAY:
 b0703
STRING:
 511145.b3593
COLOMBOS: ybfO


Product      
Name: RHS repeats-containing protein YbfO
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.6
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77779
DIP:
 DIP-11386N
ECOCYC:
 G6376-MONOMER
ECOLIWIKI:
 b0703
INTERPRO:
 IPR022385
INTERPRO:
 IPR031325
INTERPRO:
 IPR001826
PFAM:
 PF05593
PFAM:
 PF03527
PRIDE:
 P77779
PRINTS:
 PR00394
REFSEQ:
 NP_415231
SMR:
 P77779
UNIPROT:
 P77779


Operon      
Name: ybfOC         
Operon arrangement:
Transcription unit        Promoter
ybfOC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_831 734988 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RegulonDB