RegulonDB

RegulonDB RegulonDB 11.1: Gene Form

ybjX gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	ybjX
Synonym(s):	ECK0868, G6460, b0877
Genome position(nucleotides):	918128 <-- 919120
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	49.95
External database links:

ASAP:	ABE-0002982
ECHOBASE:	EB3457
ECOLIHUB:	ybjX
OU-MICROARRAY:	b0877
STRING:	511145.b0877
COLOMBOS:	ybjX

Product

Name:

DUF535 domain-containing protein YbjX

Synonym(s):

YbjX

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

38.358

Isoelectric point:

9.721

Motif(s):

Type	Positions	Sequence	Comment
	48 -> 325	FWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMA

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	biological_process	GO:0006974 - cellular response to DNA damage stimulus

Note(s):

Note(s): ...[more].

External database links:

ALPHAFOLD:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ybjX

Operon arrangement:

Transcription unit	Promoter
ybjX	ybjXp

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	aqpZp3	916133		reverse	nd	[COMP-AINF]	[1]
	promoter	aqpZp2	916212		reverse	nd	[COMP-AINF]	[1]
	promoter	macBp1	920094		forward	The sigma factor was determined by transcription profiling experiments and a bioinformatics approach Zhao K,2005. We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box. Read more >	[COMP-AINF], [COMP-AINF-POSITIONAL-IDENTIFICATION], [COMP-AINF-SIMILAR-TO-CONSENSUS]	[1], [2]
	promoter	macBp2	920337		forward	The sigma factor was determined by transcription profiling experiments and a bioinformatics approach Zhao K,2005 We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, show a distance of 6 nucleotides between the transcriptional start site and the -10 box. Read more >	[COMP-AINF], [COMP-AINF-POSITIONAL-IDENTIFICATION], [COMP-AINF-SIMILAR-TO-CONSENSUS]	[1], [2]

Evidence
[COMP-AINF] Inferred computationally without human oversight
[COMP-AINF-POSITIONAL-IDENTIFICATION] Automated inference of promoter position
[COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[2] Zhao K., Liu M., Burgess RR., 2005, The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo., J Biol Chem 280(18):17758-68

RegulonDB

Contact us Funding Terms & conditions How to cite