RegulonDB RegulonDB 11.1: Gene Form
   

ycjX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tyrR ycjX ycjF ycjW TyrR TyrR TSS_1747 TSS_1747 tyrRp tyrRp TSS_1746 TSS_1746 ycjXp ycjXp ycjWp2 ycjWp2 TSS_1745 TSS_1745

Gene      
Name: ycjX    Texpresso search in the literature
Synonym(s): ECK1317, G6659, b1321
Genome position(nucleotides): 1384117 --> 1385514
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.43
External database links:  
ASAP:
 ABE-0004433
ECHOBASE:
 EB3680
ECOLIHUB:
 ycjX
OU-MICROARRAY:
 b1321
STRING:
 511145.b1321
COLOMBOS: ycjX


Product      
Name: DUF463 domain-containing protein YcjX
Synonym(s): YcjX
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 52.61
Isoelectric point: 8.317
Motif(s):
 
Type Positions Sequence Comment
20 -> 464 LRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGVSEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLNGQRGEWSAKWRMMSEGLDPLAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNGEKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKL
26 -> 33 GLSRSGKT UniProt: ATP.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P76046
DIP:
 DIP-11615N
ECOCYC:
 G6659-MONOMER
ECOLIWIKI:
 b1321
INTERPRO:
 IPR007413
PANTHER:
 PTHR38605
PFAM:
 PF04317
PRIDE:
 P76046
REFSEQ:
 NP_415837
SMR:
 P76046
UNIPROT:
 P76046


Operon      
Name: ycjXF-tyrR         
Operon arrangement:
Transcription unit        Promoter
ycjXF-tyrR
tyrR
ycjXF


Transcriptional Regulation      
Display Regulation             
Repressed by: PgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1745 1383989 reverse nd [RS-EPT-CBR] [1]
  promoter ycjWp2 1383991 reverse nd [COMP-AINF] [2]
  promoter TSS_1746 1386691 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1747 1387697 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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