RegulonDB RegulonDB 11.0: Gene Form
   

ynbA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydbD ynbC ynbB ynbA RcsB-BglJ ynbAp ynbAp ynbAp5 ynbAp5 ynbAp3 ynbAp3

Gene      
Name: ynbA    Texpresso search in the literature
Synonym(s): ECK1401, G6727, b1408
Genome position(nucleotides): 1477621 --> 1478226
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.53
External database links:  
ASAP:
ABE-0004704
ECHOBASE:
EB3511
ECOLIHUB:
ynbA
OU-MICROARRAY:
b1408
STRING:
511145.b1408
COLOMBOS: ynbA


Product      
Name: CDP-alcohol phosphatidyltransferase domain-containing protein YnbA
Synonym(s): YnbA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 22.524
Isoelectric point: 8.331
Motif(s):
 
Type Positions Sequence Comment
26 -> 176 VTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLW
44 -> 64 LLLMLAAQPILFLLLPIVLFI UniProt: Helical.
85 -> 107 LGAILNETGDVISDIALYLPFLF UniProt: Helical.
117 -> 139 ILMLFCTILTEFCGLLAQTINGV UniProt: Helical.
152 -> 172 ALIFGLWGLAVAIYPQWMQWN UniProt: Helical.

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0016780 - phosphotransferase activity, for other substituted phosphate groups
biological_process GO:0008654 - phospholipid biosynthetic process
Note(s): Note(s): ...[more].
Reference(s): [1] Rathmann C., et al., 2017
External database links:  
ALPHAFOLD:
P76090
ECOCYC:
G6727-MONOMER
ECOLIWIKI:
b1408
INTERPRO:
IPR000462
INTERPRO:
IPR043130
PFAM:
PF01066
PRIDE:
P76090
REFSEQ:
NP_415926
UNIPROT:
P76090


Operon      
Name: ynbABCD         
Operon arrangement:
Transcription unit        Promoter
ynbABCD


Transcriptional Regulation      
Display Regulation             
Activated by: RcsB-BglJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ynbAp3 1477462 forward nd [ICWHO] [2]
  promoter ynbAp5 1477471 forward nd [ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Rathmann C., Schlosser AS., Schiller J., Bogdanov M., Bruser T., 2017, Tat transport in Escherichia coli requires zwitterionic phosphatidylethanolamine but no specific negatively charged phospholipid., FEBS Lett 591(18):2848-2858

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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