RegulonDB RegulonDB 10.9: Gene Form
   

dmlR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: dmlR    Texpresso search in the literature
Synonym(s): ECK1797, G6985, b1799, yeaT
Genome position(nucleotides): 1880886 <-- 1881809 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.38
External database links:  
ASAP:
ABE-0005987
ECHOBASE:
EB3279
ECOLIHUB:
yeaT
OU-MICROARRAY:
b1799
STRING:
511145.b1799
COLOMBOS: dmlR


Product      
Name: DNA-binding transcriptional regulator DmlR
Synonym(s): DmlR, YeaT
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 34.631
Isoelectric point: 6.678
Motif(s):
 
Type Positions Sequence
5 -> 62 PLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTIT
22 -> 41 FAAVAEELGVSPAFVSKRIA
7 -> 66 LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE
91 -> 295 QVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITVEFLRQYF

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0043565 - sequence-specific DNA binding
biological_process GO:0006351 - transcription, DNA-templated
GO:0006355 - regulation of transcription, DNA-templated
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0006108 - malate metabolic process
GO:0045893 - positive regulation of transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [AIFS] Automated inference of function from sequence
[IEP] Inferred from expression pattern
[IMP] Inferred from mutant phenotype
Reference(s): [1] Lukas H., et al., 2010
[2] Perez-Rueda E., et al., 2004
[3] Reed JL., et al., 2006
External database links:  
ECOCYC:
G6985-MONOMER
ECOLIWIKI:
b1799
INTERPRO:
IPR005119
INTERPRO:
IPR036390
INTERPRO:
IPR036388
INTERPRO:
IPR000847
MODBASE:
P76250
PFAM:
PF00126
PFAM:
PF03466
PRIDE:
P76250
PROSITE:
PS50931
REFSEQ:
NP_416313
SMR:
P76250
UNIPROT:
P76250


Operon      
Name: dmlR         
Operon arrangement:
Transcription unit        Promoter
dmlR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter leuEp4 1880767 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter dmlAp4 1881712 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter dmlRp3 1881855 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_2129 1881877 forward nd [RS-EPT-CBR] [5]



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