RegulonDB RegulonDB 10.9: Gene Form
   

yffS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

eutA yffS yffR eutH TSS_2748 TSS_2748 yffSp4 yffSp4

Gene      
Name: yffS    Texpresso search in the literature
Synonym(s): ECK2445, G7280, b2450
Genome position(nucleotides): 2564523 --> 2565332 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.49
External database links:  
ASAP:
ABE-0008077
ECHOBASE:
EB3932
ECOLIHUB:
yffS
OU-MICROARRAY:
b2450
STRING:
511145.b2450
COLOMBOS: yffS


Product      
Name: CPZ-55 prophage; uncharacterized protein YffS
Synonym(s): YffS
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 29.751
Isoelectric point: 5.181
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12033N
ECOCYC:
G7280-MONOMER
ECOLIWIKI:
b2450
INTERPRO:
IPR010982
INTERPRO:
IPR001387
PRIDE:
P76550
REFSEQ:
NP_416945
UNIPROT:
P76550


Operon      
Name: yffS         
Operon arrangement:
Transcription unit        Promoter
yffS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yffSp4 2564400 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_2748 2564868 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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