RegulonDB RegulonDB 11.1: Gene Form
   

insM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insI3 fecE yjhV insM terminator anti-terminator anti-anti-terminator terminator insIp5 insIp5 TSS_5123 TSS_5123

Gene      
Name: insM    Texpresso search in the literature
Synonym(s): ECK4273, G0-10567, b4561
Type: Pseudo Gene
Genome position(nucleotides): 4508684 <-- 4508942
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 46.33
External database links:  
ASAP:
 ABE-0285082
ECOLIHUB:
 insM
COLOMBOS: insM


Operon      
Name: insMI3         
Operon arrangement:
Transcription unit        Promoter
insMI3


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5123 4507785 forward nd [RS-EPT-CBR] [1]
  promoter insIp5 4508686 reverse nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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