RegulonDB RegulonDB 11.1: Gene Form
   

ralA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

recT xisR rcbA ralR ralA recE Rac prophage; antitoxin RalA terminator ralAp ralAp intRp4 intRp4

Gene      
Name: ralA    Texpresso search in the literature
Synonym(s): ECK4571, G0-16600, b4714
Genome position(nucleotides): 1413556 --> 1413734
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 36.87


Product      
Name: Rac prophage; small regulatory RNA antitoxin RalA
Synonym(s): RalA, RalA antitoxin of the RalRA toxin-antitoxin system
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
Note(s): Note(s): ...[more].
Evidence: [EXP-IMP] Inferred from mutant phenotype
Reference(s): [1] Guo Y., et al., 2014
External database links:  
ECOCYC:
 RNA0-385


Operon      
Name: ralA         
Operon arrangement:
Transcription unit        Promoter
ralA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter intRp4 1413260 reverse nd [COMP-AINF] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Guo Y., Quiroga C., Chen Q., McAnulty MJ., Benedik MJ., Wood TK., Wang X., 2014, RalR (a DNase) and RalA (a small RNA) form a type I toxin-antitoxin system in Escherichia coli., Nucleic Acids Res 42(10):6448-62

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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