RegulonDB RegulonDB 11.1: Gene Form
   

araJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sbcC araJ mak sbcD CRP AraC AraC CRP araJp araJp

Gene      
Name: araJ    Texpresso search in the literature
Synonym(s): ECK0390, EG10060, araT, b0396
Genome position(nucleotides): 411297 <-- 412481
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.72
External database links:  
ASAP:
 ABE-0001378
CGSC:
 29861
ECHOBASE:
 EB0058
ECOLIHUB:
 araJ
OU-MICROARRAY:
 b0396
STRING:
 511145.b0396
COLOMBOS: araJ


Product      
Name: putative transport protein AraJ
Synonym(s): AraJ, AraJ MFS transporter, AraT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 41.926
Isoelectric point: 9.823
Motif(s):
 
Type Positions Sequence Comment
5 -> 27 ILSLALGTFGLGMAEFGIMGVLT UniProt: Helical.
8 -> 328 LALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG
42 -> 63 HMISYYALGVVVGAPIIALFSS UniProt: Helical.
70 -> 89 ILLFLVALCVIGNAMFTLSS UniProt: Helical.
94 -> 116 LAIGRLVSGFPHGAFFGVGAIVL UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P23910
ECOCYC:
 ARAJ-MONOMER
ECOLIWIKI:
 b0396
INTERPRO:
 IPR020846
INTERPRO:
 IPR011701
INTERPRO:
 IPR036259
MODBASE:
 P23910
PFAM:
 PF07690
PRIDE:
 P23910
PRODB:
 PRO_000022122
PROSITE:
 PS50850
REFSEQ:
 NP_414930
UNIPROT:
 P23910


Operon      
Name: araJ         
Operon arrangement:
Transcription unit        Promoter
araJ


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, AraC
Repressed by: CRP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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