RegulonDB RegulonDB 10.9: Gene Form
   

cdh gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sbp tpiA cdh terminator anti-terminator anti-anti-terminator TSS_4615 TSS_4615 TSS_4614 TSS_4614 TSS_4613 TSS_4613 TSS_4612 TSS_4612 cdhp cdhp

Gene      
Name: cdh    Texpresso search in the literature
Synonym(s): ECK3910, EG10138, b3918
Genome position(nucleotides): 4109930 --> 4110685 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.68
External database links:  
ASAP:
ABE-0012797
CGSC:
931
ECHOBASE:
EB0136
ECOLIHUB:
cdh
OU-MICROARRAY:
b3918
STRING:
511145.b3918
COLOMBOS: cdh


Product      
Name: CDP-diacylglycerol diphosphatase
Synonym(s): Cdh
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 28.451
Isoelectric point: 8.609
Motif(s):
 
Type Positions Sequence
31 -> 249 SDTLRKIVLEECLPNQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVRKQLDNNLANISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGRYGLAMVRQSDNSFVLLATQRNLLTLNRASAEEIQDHQCEI
4 -> 24 AGLLFLVMIVIAVVAAGIGYW

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0016787 - hydrolase activity
GO:0008715 - CDP-diacylglycerol diphosphatase activity
biological_process GO:0006629 - lipid metabolic process
GO:0008654 - phospholipid biosynthetic process
GO:0046342 - CDP-diacylglycerol catabolic process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
CDPDIGLYPYPHOSPHA-MONOMER
ECOLIWIKI:
b3918
INTERPRO:
IPR036265
INTERPRO:
IPR015993
INTERPRO:
IPR003763
INTERPRO:
IPR038433
PFAM:
PF02611
PRIDE:
P06282
PRODB:
PRO_000022265
REFSEQ:
NP_418353
SMR:
P06282
UNIPROT:
P06282


Operon      
Name: cdh         
Operon arrangement:
Transcription unit        Promoter
cdh


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4612 4111330 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4613 4111496 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4614 4111500 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4615 4111507 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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