RegulonDB RegulonDB 10.9: Gene Form
   

glgP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glgP glgA yzgL anti-anti-terminator anti-terminator terminator TSS_4033 TSS_4033 TSS_4032 TSS_4032 TSS_4031 TSS_4031 glgPp1 glgPp1 TSS_4030 TSS_4030 TSS_4029 TSS_4029 TSS_4028 TSS_4028 TSS_4027 TSS_4027

Gene      
Name: glgP    Texpresso search in the literature
Synonym(s): ECK3414, EG10380, b3428, glgY
Genome position(nucleotides): 3564134 <-- 3566581 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.98
External database links:  
ASAP:
ABE-0011198
CGSC:
33653
ECHOBASE:
EB0375
ECOLIHUB:
glgP
MIM:
232600
MIM:
232700
OU-MICROARRAY:
b3428
STRING:
511145.b3428
COLOMBOS: glgP


Product      
Name: glycogen phosphorylase
Synonym(s): GlgP, GlgY
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 93.172
Isoelectric point: 5.753
Motif(s):
 
Type Positions Sequence
60 -> 60 S
102 -> 810 LEAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHI
175 -> 175 Y
182 -> 187 KRHNTR
94 -> 95 IY

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.9 - cytoplasmic polysaccharides
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0102250 - linear malto-oligosaccharide phosphorylase activity
GO:0102499 - SHG alpha-glucan phosphorylase activity
GO:0003824 - catalytic activity
GO:0005515 - protein binding
GO:0016757 - transferase activity, transferring glycosyl groups
GO:0016740 - transferase activity
GO:0004645 - 1,4-alpha-oligoglucan phosphorylase activity
GO:0008184 - glycogen phosphorylase activity
GO:0030170 - pyridoxal phosphate binding
GO:0042803 - protein homodimerization activity
biological_process GO:0008152 - metabolic process
GO:0005975 - carbohydrate metabolic process
GO:0005977 - glycogen metabolic process
GO:0005980 - glycogen catabolic process
External database links:  
DIP:
DIP-47899N
ECOCYC:
GLYCOPHOSPHORYL-MONOMER
ECOLIWIKI:
b3428
INTERPRO:
IPR000811
INTERPRO:
IPR035090
INTERPRO:
IPR011833
MODBASE:
P0AC86
PANTHER:
PTHR11468
PFAM:
PF00343
PRIDE:
P0AC86
PRODB:
PRO_000022778
PROSITE:
PS00102
REFSEQ:
NP_417886
SMR:
P0AC86
SWISSMODEL:
P0AC86
UNIPROT:
P0AC86


Operon      
Name: glgBXCAP         
Operon arrangement:
Transcription unit        Promoter
glgAP
glgCAP
glgCAP
glgCAP
glgBXCAP


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, PhoP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4027 3564324 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4028 3565337 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4029 3565453 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4030 3566562 reverse nd [RS-EPT-CBR] [1]
  promoter glgPp1 3566773 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_4031 3567478 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4032 3567563 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4033 3567895 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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