RegulonDB RegulonDB 10.8: Gene Form
   

rpmD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: rpmD    Texpresso search in the literature
Synonym(s): ECK3289, EG10888, b3302
Genome position(nucleotides): 3444543 <-- 3444722 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
ASAP:
ABE-0010821
CGSC:
238
ECHOBASE:
EB0881
OU-MICROARRAY:
b3302
PortEco:
rpmD
STRING:
511145.b3302
COLOMBOS: rpmD


Product      
Name: 50S ribosomal subunit protein L30
Synonym(s): RpmD
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol,ribosome
Molecular weight: 6.542
Isoelectric point: 11.608
Motif(s):
 
Type Positions Sequence
5 -> 55 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMV
2 -> 59 AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005840 - ribosome
GO:0015934 - large ribosomal subunit
GO:0022625 - cytosolic large ribosomal subunit
molecular_function GO:0003735 - structural constituent of ribosome
biological_process GO:0006412 - translation
GO:0000027 - ribosomal large subunit assembly
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-35970N
ECOCYC:
EG10888-MONOMER
ECOLIWIKI:
b3302
INTERPRO:
IPR005996
INTERPRO:
IPR016082
INTERPRO:
IPR018038
INTERPRO:
IPR036919
PANTHER:
PTHR15892
PDB:
1ML5
PDB:
2J28
PDB:
2RDO
PDB:
3BBX
PDB:
3J5L
PDB:
3J7Z
PDB:
3J8G
PDB:
3J9Y
PDB:
3J9Z
PDB:
3JA1
PDB:
3JBU
PDB:
3JBV
PDB:
3JCD
PDB:
3JCE
PDB:
3JCJ
PDB:
3JCN
PDB:
4CSU
PDB:
4U1U
PDB:
4U1V
PDB:
4U20
PDB:
4U24
PDB:
4U25
PDB:
4U26
PDB:
4U27
PDB:
4UY8
PDB:
4V47
PDB:
4V48
PDB:
4V4H
PDB:
4V4Q
PDB:
4V4V
PDB:
4V4W
PDB:
4V50
PDB:
4V52
PDB:
4V53
PDB:
4V54
PDB:
4V55
PDB:
4V56
PDB:
4V57
PDB:
4V5B
PDB:
4V5H
PDB:
4V5Y
PDB:
4V64
PDB:
4V65
PDB:
4V66
PDB:
4V69
PDB:
4V6C
PDB:
4V6D
PDB:
4V6E
PDB:
4V6K
PDB:
4V6L
PDB:
4V6M
PDB:
4V6N
PDB:
4V6O
PDB:
4V6P
PDB:
4V6Q
PDB:
4V6R
PDB:
4V6S
PDB:
4V6T
PDB:
4V6V
PDB:
4V6Y
PDB:
4V6Z
PDB:
4V70
PDB:
4V71
PDB:
4V72
PDB:
4V73
PDB:
4V74
PDB:
4V75
PDB:
4V76
PDB:
4V77
PDB:
4V78
PDB:
4V79
PDB:
4V7A
PDB:
4V7B
PDB:
4V7C
PDB:
4V7D
PDB:
4V7I
PDB:
4V7S
PDB:
4V7T
PDB:
4V7U
PDB:
4V7V
PDB:
4V85
PDB:
4V89
PDB:
4V9C
PDB:
4V9D
PDB:
4V9O
PDB:
4V9P
PDB:
4WF1
PDB:
4WOI
PDB:
4WWW
PDB:
4YBB
PDB:
5ADY
PDB:
5AFI
PDB:
5AKA
PDB:
5GAD
PDB:
5GAE
PDB:
5GAF
PDB:
5GAG
PDB:
5GAH
PDB:
5H5U
PDB:
5IQR
PDB:
5IT8
PDB:
5J5B
PDB:
5J7L
PDB:
5J88
PDB:
5J8A
PDB:
5J91
PDB:
5JC9
PDB:
5JTE
PDB:
5JU8
PDB:
5KCR
PDB:
5KCS
PDB:
5KPS
PDB:
5KPV
PDB:
5KPW
PDB:
5KPX
PDB:
5L3P
PDB:
5LZA
PDB:
5LZB
PDB:
5LZC
PDB:
5LZD
PDB:
5LZE
PDB:
5LZF
PDB:
5MDV
PDB:
5MDW
PDB:
5MDY
PDB:
5MDZ
PDB:
5MGP
PDB:
5NCO
PDB:
5NP6
PDB:
5NWY
PDB:
5O2R
PDB:
5U4I
PDB:
5U9F
PDB:
5U9G
PDB:
5UYK
PDB:
5UYL
PDB:
5UYM
PDB:
5UYN
PDB:
5UYP
PDB:
5UYQ
PDB:
5WDT
PDB:
5WE4
PDB:
5WE6
PDB:
5WFK
PDB:
6BU8
PDB:
6BY1
PDB:
6C4I
PDB:
6ENF
PDB:
6ENJ
PDB:
6ENU
PDB:
6GBZ
PDB:
6GC0
PDB:
6GC4
PDB:
6GC6
PDB:
6GC7
PDB:
6GC8
PDB:
6GWT
PDB:
6GXM
PDB:
6GXN
PDB:
6GXO
PDB:
6GXP
PDB:
6H4N
PDB:
6H58
PDB:
6HRM
PDB:
6I0Y
PDB:
6I7V
PDB:
6OFX
PDB:
6OG7
PDB:
6Q98
PDB:
6Q9A
PDB:
6QUL
PFAM:
PF00327
PRIDE:
P0AG51
PRODB:
PRO_000023835
PROSITE:
PS00634
REFSEQ:
NP_417761
SMR:
P0AG51
SWISSMODEL:
P0AG51
UNIPROT:
P0AG51


Operon      
Name: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ         
Operon arrangement:
Transcription unit        Promoter
rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3711 3444116 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3712 3444233 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3713 3444262 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3714 3444279 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3715 (cluster) 3444289 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3716 3444332 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3717 3444337 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3718 (cluster) 3444340 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3719 3444345 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3720 (cluster) 3444352 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3721 3444474 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3722 3444481 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3723 3444485 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3724 3444497 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3725 3444499 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3726 3444507 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3727 3444510 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3728 (cluster) 3444704 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3729 3444805 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3730 3444813 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3731 3445015 reverse nd [RS-EPT-CBR] [1]



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