RegulonDB RegulonDB 10.9: Gene Form
   

sbp gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sbp pfkA cdh terminator anti-terminator anti-anti-terminator terminator anti-terminator anti-anti-terminator cdhp cdhp TSS_4611 TSS_4611 TSS_4610 TSS_4610 TSS_4609 TSS_4609 TSS_4608 (cluster) TSS_4608 (cluster) TSS_4607 TSS_4607

Gene      
Name: sbp    Texpresso search in the literature
Synonym(s): ECK3909, EG10929, b3917
Genome position(nucleotides): 4108834 --> 4109823 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.61
External database links:  
ASAP:
ABE-0012794
CGSC:
17911
ECHOBASE:
EB0922
ECOLIHUB:
sbp
OU-MICROARRAY:
b3917
STRING:
511145.b3917
COLOMBOS: sbp


Product      
Name: sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp
Synonym(s): Sbp
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 36.659
Isoelectric point: 7.176
Motif(s):
 
Type Positions Sequence
1 -> 19 MNKWGVGLTFLLAATSVMA
30 -> 280 DPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYR
185 -> 185 V
20 -> 329 KDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.8 - metabolism of other compounds --> 1.8.2 - sulfur metabolism
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.p - ABC superfamily, periplasmic binding component
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
molecular_function GO:0015419 - ATPase-coupled sulfate transmembrane transporter activity
GO:0043199 - sulfate binding
GO:1901681 - sulfur compound binding
biological_process GO:0006790 - sulfur compound metabolic process
GO:0008272 - sulfate transport
GO:1902358 - sulfate transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-35843N
ECOCYC:
SBP-MONOMER
ECOLIWIKI:
b3917
INTERPRO:
IPR000957
INTERPRO:
IPR005669
INTERPRO:
IPR034408
MODBASE:
P0AG78
PANTHER:
PTHR30368
PFAM:
PF13531
PRIDE:
P0AG78
PRODB:
PRO_000023914
PROSITE:
PS00401
PROSITE:
PS00757
REFSEQ:
NP_418352
SMR:
P0AG78
SWISSMODEL:
P0AG78
UNIPROT:
P0AG78


Operon      
Name: sbp         
Operon arrangement:
Transcription unit        Promoter
sbp


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4607 4107556 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4608 (cluster) 4107822 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_4609 4107877 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4610 4108126 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4611 4108805 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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