RegulonDB RegulonDB 10.10: Gene Form
   

yciF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yciE yciF yciG terminator yciEp2 yciEp2 yciEp yciEp yciEp7 yciEp7 yciEp6 yciEp6

Gene      
Name: yciF    Texpresso search in the literature
Synonym(s): ECK1252, EG11126, b1258
Genome position(nucleotides): 1315270 <-- 1315770 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 43.11
External database links:  
ASAP:
 ABE-0004222
ECHOBASE:
 EB1116
ECOLIHUB:
 yciF
OU-MICROARRAY:
 b1258
STRING:
 511145.b1258
COLOMBOS: yciF


Product      
Name: DUF892 domain-containing protein YciF
Synonym(s): YciF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 18.597
Isoelectric point: 5.385
Motif(s):
 
Type Positions Sequence
5 -> 163 TIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNKKAE

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0042803 - protein homodimerization activity
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
Reference(s): [1] Liu D., et al., 2004
External database links:  
DIP:
 DIP-11580N
ECOCYC:
 EG11126-MONOMER
ECOLIWIKI:
 b1258
INTERPRO:
 IPR010287
INTERPRO:
 IPR009078
INTERPRO:
 IPR012347
PDB:
 2GS4
PFAM:
 PF05974
PRIDE:
 P21362
REFSEQ:
 NP_415774
SMR:
 P21362
UNIPROT:
 P21362


Operon      
Name: yciGFE         
Operon arrangement:
Transcription unit        Promoter
yciE
yciG
yciGFE


Transcriptional Regulation      
Display Regulation             
Activated by: McbR
Repressed by: H-NS


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yciEp6 1315238 reverse nd [ICWHO] [2]
  promoter yciEp7 1315321 reverse nd [ICWHO] [2]
  promoter yciEp2 1315397 reverse nd [ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Liu D., Zhao Y., Fan X., Sun Y., Fox RO., 2004, Escherichia coli stress protein YciF: expression, crystallization and preliminary crystallographic analysis., Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 2):2389-90

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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