RegulonDB RegulonDB 10.9: Gene Form
   

ydcA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydcA yncP rydC hokB TSS_1805 TSS_1805 ydcAp7 ydcAp7 ydcAp6 ydcAp6 rydCp rydCp

Gene      
Name: ydcA    Texpresso search in the literature
Synonym(s): ECK1411, EG11219, b1419
Genome position(nucleotides): 1491677 --> 1491850 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.25
External database links:  
ASAP:
 ABE-0004736
ECHOBASE:
 EB1202
ECOLIHUB:
 ydcA
OU-MICROARRAY:
 b1419
STRING:
 511145.b1419
COLOMBOS: ydcA


Product      
Name: protein YdcA
Synonym(s): YdcA
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 5.86
Isoelectric point: 9.911
Motif(s):
 
Type Positions Sequence
25 -> 28 CSGS
1 -> 20 MKKLALILFMGTLVSFYADA
32 -> 57 ISHCTAGGKFVCNDGSISASKKTCTN
21 -> 57 GRKPCSGSKGGISHCTAGGKFVCNDGSISASKKTCTN

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 EG11219-MONOMER
ECOLIWIKI:
 b1419
PRIDE:
 P0ACW4
REFSEQ:
 NP_415936
SMR:
 P0ACW4
UNIPROT:
 P0ACW4


Operon      
Name: ydcA         
Operon arrangement:
Transcription unit        Promoter
ydcA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ydcAp6 1491647 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter ydcAp7 1491653 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter TSS_1805 1491888 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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