RegulonDB RegulonDB 10.9: Gene Form
   

rhaT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhaT rhaR rhaS sodA RhaS SoxR IHF ArcA ArcA ArcA ArcA IHF Fur Fur ArcA FNR Fur ArcA Rob MarA Fur SoxS IHF IHF CRP RhaS RhaS RhaS terminator sodAp sodAp rhaTp rhaTp

Gene      
Name: rhaT    Texpresso search in the literature
Synonym(s): ECK3900, EG11313, b3907
Genome position(nucleotides): 4099491 <-- 4100525 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.69
External database links:  
ASAP:
ABE-0012749
CGSC:
34185
ECHOBASE:
EB1289
ECOLIHUB:
rhaT
OU-MICROARRAY:
b3907
STRING:
511145.b3907
COLOMBOS: rhaT


Product      
Name: rhamnose/lyxose:H+ symporter
Synonym(s): RhaT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 37.32
Isoelectric point: 9.897
Motif(s):
 
Type Positions Sequence
6 -> 26 TMGIFWHLIGAASAACFYAPF
1 -> 343 MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTRLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMA
37 -> 57 MWSVGGIVSWIILPWAISALL
131 -> 152 TEGGRMTLLGVLVALIGVGIVT
290 -> 310 ISWMLHMSFYVLCGGIVGLVL

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015293 - symporter activity
GO:0015153 - rhamnose transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0008645 - hexose transmembrane transport
GO:0015762 - rhamnose transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
RHAT-MONOMER
ECOLIWIKI:
b3907
INTERPRO:
IPR004673
PFAM:
PF06379
PRIDE:
P27125
PRODB:
PRO_000023739
REFSEQ:
NP_418343
UNIPROT:
P27125


Operon      
Name: rhaT         
Operon arrangement:
Transcription unit        Promoter
rhaT


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, RhaS
Repressed by: ArcA
Undetermined regulation RhaS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB