RegulonDB RegulonDB 10.9: Gene Form
   

asmA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: asmA    Texpresso search in the literature
Synonym(s): ECK2058, EG11361, b2064, yegA
Genome position(nucleotides): 2139759 <-- 2141612 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.54
External database links:  
ASAP:
ABE-0006833
ECHOBASE:
EB1336
ECOLIHUB:
asmA
OU-MICROARRAY:
b2064
STRING:
511145.b2064
COLOMBOS: asmA


Product      
Name: putative assembly protein AsmA
Synonym(s): AsmA, YegA
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space,inner membrane
Molecular weight: 68.963
Isoelectric point: 5.092
Motif(s):
 
Type Positions Sequence
1 -> 22 MRRFLTTLMILLVVLVAGLSAL
4 -> 27 FLTTLMILLVVLVAGLSALVLLVN
23 -> 617 VLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM
227 -> 511 LQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLND
354 -> 379 GMNFTDVATQMTNKSGLLEITQLQGK

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide
  6 - cell structure --> 6.3 - surface antigens (ECA, O antigen of LPS)
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
biological_process GO:0090313 - regulation of protein targeting to membrane
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Misra R., et al., 1995
[2] Xiong X., et al., 1996
External database links:  
DIP:
DIP-9175N
ECOCYC:
EG11361-MONOMER
ECOLIWIKI:
b2064
INTERPRO:
IPR007844
PFAM:
PF05170
PRIDE:
P28249
PRODB:
PRO_000022166
REFSEQ:
NP_416568
UNIPROT:
P28249


Operon      
Name: asmA         
Operon arrangement:
Transcription unit        Promoter
asmA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2399 2140025 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2400 2140792 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2401 2140838 reverse nd [RS-EPT-CBR] [3]



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