RegulonDB RegulonDB 10.9: Gene Form
   

inaA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glpQ inaA yfaE yfaH SoxS Rob MarA terminator inaAp inaAp

Gene      
Name: inaA    Texpresso search in the literature
Synonym(s): ECK2229, EG11422, b2237, yfaG
Genome position(nucleotides): 2348822 <-- 2349472 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.46
External database links:  
ASAP:
ABE-0007393
CGSC:
32692
ECHOBASE:
EB1392
ECOLIHUB:
inaA
OU-MICROARRAY:
b2237
STRING:
511145.b2237
COLOMBOS: inaA


Product      
Name: putative lipopolysaccharide kinase InaA
Synonym(s): InaA, YfaG, pH-inducible protein involved in stress response
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 25.296
Isoelectric point: 9.385
Motif(s):
 
Type Positions Sequence
11 -> 213 NHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYY

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.4 - pH
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Lee JH., et al., 2007
[2] Lee S., et al., 2012
[3] Lee S., et al., 2012
[4] Van Dyk TK., et al., 1998
External database links:  
ECOCYC:
EG11422-MONOMER
ECOLIWIKI:
b2237
INTERPRO:
IPR011009
INTERPRO:
IPR027023
PFAM:
PF06293
PRIDE:
P27294
PRODB:
PRO_000023011
REFSEQ:
NP_416740
SMR:
P27294
UNIPROT:
P27294


Operon      
Name: inaA         
Operon arrangement:
Transcription unit        Promoter
inaA


Transcriptional Regulation      
Display Regulation             
Activated by: MarA, SoxS, Rob


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Lee JH., Youn CH., Kim BC., Gu MB., 2007, An oxidative stress-specific bacterial cell array chip for toxicity analysis., Biosens Bioelectron 22(9-10):2223-9

 [2] Lee S., Mitchell RJ., 2012, Detection of toxic lignin hydrolysate-related compounds using an inaA::luxCDABE fusion strain., J Biotechnol 157(4):598-604

 [3] Lee S., Nam D., Jung JY., Oh MK., Sang BI., Mitchell RJ., 2012, Identification of Escherichia coli biomarkers responsive to various lignin-hydrolysate compounds., Bioresour Technol 114:450-6

 [4] Van Dyk TK., Ayers BL., Morgan RW., Larossa RA., 1998, Constricted flux through the branched-chain amino acid biosynthetic enzyme acetolactate synthase triggers elevated expression of genes regulated by rpoS and internal acidification., J Bacteriol 180(4):785-92


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