RegulonDB RegulonDB 10.8: Gene Form
   

ycgB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: ycgB    Texpresso search in the literature
Synonym(s): ECK1176, EG11516, b1188
Genome position(nucleotides): 1235709 <-- 1237241 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.84
External database links:  
ASAP:
ABE-0003990
ECHOBASE:
EB1478
OU-MICROARRAY:
b1188
PortEco:
ycgB
STRING:
511145.b1188
COLOMBOS: ycgB


Product      
Name: PF04293 family protein YcgB
Synonym(s): YcgB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 60.814
Isoelectric point: 5.868
Motif(s):
 
Type Positions Sequence
19 -> 450 DWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
Reference(s): [1] Andres Leon E., et al., 2009
External database links:  
DIP:
DIP-11550N
ECOCYC:
EG11516-MONOMER
ECOLIWIKI:
b1188
INTERPRO:
IPR007390
PANTHER:
PTHR30029
PFAM:
PF04293
PRIDE:
P29013
REFSEQ:
NP_415706
UNIPROT:
P29013


Operon      
Name: ycgB         
Operon arrangement:
Transcription unit        Promoter
ycgB


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1513 1236798 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1514 1236840 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1515 1237036 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1516 1237229 reverse nd [RS-EPT-CBR] [2]



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