RegulonDB RegulonDB 11.1: Gene Form
   

nohA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

stfQ tfaQ nohA ynfO Fur Fur ynfOp1 ynfOp1 nohAp nohAp tfaQp6 tfaQp6

Gene      
Name: nohA    Texpresso search in the literature
Synonym(s): ECK1541, EG11634, b1548, nohQ
Genome position(nucleotides): 1635798 <-- 1636367
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.68
External database links:  
ASAP:
 ABE-0005172
ECHOBASE:
 EB1590
ECOLIHUB:
 nohA
ECOO157CYC:
 Z2365
OU-MICROARRAY:
 b1548
STRING:
 511145.b0560
COLOMBOS: nohA


Product      
Name: Qin prophage; putative prophage DNA-packaging protein NohA
Synonym(s): NohA, NohQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.404
Isoelectric point: 5.016
Motif(s):
 
Type Positions Sequence Comment
1 -> 164 MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIRWYAERDAEIENEKLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAA

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P31061
DIP:
 DIP-10355N
ECOCYC:
 EG11634-MONOMER
ECOLIWIKI:
 b1548
ECOO157CYC:
 Z2365-MONOMER
INTERPRO:
 IPR009061
INTERPRO:
 IPR010906
INTERPRO:
 IPR036388
MODBASE:
 P31061
PFAM:
 PF07471
PRIDE:
 P31061
REFSEQ:
 NP_416066
SMR:
 P31061
SWISSMODEL:
 P31061
UNIPROT:
 P31061


Operon      
Name: nohA-stfQ-tfaQ         
Operon arrangement:
Transcription unit        Promoter
nohA-stfQ-tfaQ


Transcriptional Regulation      
Display Regulation             
Repressed by: Fur


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tfaQp6 1634956 reverse nd [COMP-AINF] [1]
  promoter ynfOp1 1636727 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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