RegulonDB RegulonDB 11.0: Gene Form
   

yicJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yicI yicJ selC terminator selCp selCp

Gene      
Name: yicJ    Texpresso search in the literature
Synonym(s): ECK3647, EG11686, b3657
Genome position(nucleotides): 3834547 <-- 3835929
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.39
External database links:  
ASAP:
 ABE-0011953
ECHOBASE:
 EB1637
ECOLIHUB:
 yicJ
OU-MICROARRAY:
 b3657
STRING:
 511145.b3657
COLOMBOS: yicJ


Product      
Name: putative xyloside transporter YicJ
Synonym(s): YicJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 50.948
Isoelectric point: 8.507
Motif(s):
 
Type Positions Sequence Comment
12 -> 32 IGYGMGDAASHIIFDNVMLYM UniProt: Helical.
13 -> 431 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLT
33 -> 53 MFFYTDIFGIPAGFVGTMFLV UniProt: Helical.
81 -> 101 PWVLFGALPFGIVCVLAYSTP UniProt: Helical.
117 -> 137 TLLTLLYTVVNIPYCALGGVI UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015293 - symporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0006814 - sodium ion transport
GO:0055085 - transmembrane transport
GO:0071702 - organic substance transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ALPHAFOLD:
 P31435
ECOCYC:
 YICJ-MONOMER
ECOLIWIKI:
 b3657
INTERPRO:
 IPR036259
INTERPRO:
 IPR001927
INTERPRO:
 IPR018043
INTERPRO:
 IPR039672
MODBASE:
 P31435
PANTHER:
 PTHR11328
PFAM:
 PF13347
PRIDE:
 P31435
PROSITE:
 PS00872
REFSEQ:
 NP_418114
UNIPROT:
 P31435


Operon      
Name: yicJI         
Operon arrangement:
Transcription unit        Promoter
yicJI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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