RegulonDB

Gene
Name:	setA
Synonym(s):	ECK0072, EG11754, b0070, yabM
Genome position(nucleotides):	77621 --> 78799 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.52
External database links:

ASAP:	ABE-0000257
ECHOBASE:	EB1704
OU-MICROARRAY:	b0070
PortEco:	setA
STRING:	511145.b0070
COLOMBOS:	setA

Product

Name:

sugar exporter SetA

Synonym(s):

SetA, YabM

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

42.713

Isoelectric point:

9.794

Motif(s):

Type	Positions	Sequence
	82 -> 102	LIIFCCLMAIGNALLFAFNRH
	150 -> 170	LSLAWVIGPPLAFMLALNYGF
	220 -> 240	LFVASTLMWTCNTMYIIDMPL
	107 -> 127	ITCGVLLASLANTAMPQLFAL
	283 -> 303	MMVIAVAAGVLFYTGLIFFNS

Classification:

Multifun Terms (GenProtEC)
		4 - transport --> 4.2 - Electrochemical potential driven transporters
		5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
		6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0005887 - integral component of plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0005351 - carbohydrate:proton symporter activity GO:0022857 - transmembrane transporter activity
	biological_process	GO:0008643 - carbohydrate transport GO:0055085 - transmembrane transport GO:0015767 - lactose transport GO:0034219 - carbohydrate transmembrane transport GO:1902600 - proton transmembrane transport GO:0036448 - cellular response to glucose-phosphate stress GO:1904659 - glucose transmembrane transport

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PANTHER:

PFAM:

PRIDE:

PRODB:

PROSITE:

REFSEQ:

UNIPROT:

Operon

Name:

sgrST-setA

Operon arrangement:

Transcription unit	Promoter
sgrST-setA	sgrSp

Transcriptional Regulation
	Display Regulation
Activated by:	SgrR
Repressed by:	Cra

RNA cis-regulatory element

Attenuation:	Transcriptional

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_122	79281		reverse	nd	[RS-EPT-CBR]	[1]
	promoter	TSS_123	79386		reverse	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.