RegulonDB RegulonDB 10.9: Gene Form
   

yciK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

sohB rluB yciK btuR CRP CRP sohBp2 sohBp2 sohBp1 sohBp1 TSS_1708 TSS_1708 TSS_1707 TSS_1707 TSS_1706 TSS_1706 TSS_1705 TSS_1705 TSS_1704 (cluster) TSS_1704 (cluster)

Gene      
Name: yciK    Texpresso search in the literature
Synonym(s): ECK1265, EG11759, b1271
Genome position(nucleotides): 1328354 <-- 1329112 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.44
External database links:  
ASAP:
ABE-0004263
ECHOBASE:
EB1709
ECOLIHUB:
yciK
OU-MICROARRAY:
b1271
STRING:
511145.b1271
COLOMBOS: yciK


Product      
Name: putative oxidoreductase
Synonym(s): YciK
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.933
Isoelectric point: 7.936
Motif(s):
 
Type Positions Sequence
16 -> 40 LVTGASDGIGREAAMTYARYGATVI
63 -> 63 Q
14 -> 208 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPT

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
biological_process GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11759-MONOMER
ECOLIWIKI:
b1271
INTERPRO:
IPR020904
INTERPRO:
IPR002347
INTERPRO:
IPR036291
MODBASE:
P31808
PDB:
3F1L
PDB:
3F1K
PDB:
3E9Q
PFAM:
PF00106
PRIDE:
P31808
PRINTS:
PR00081
PROSITE:
PS00061
REFSEQ:
NP_415787
SMR:
P31808
UNIPROT:
P31808


Operon      
Name: yciK-btuR         
Operon arrangement:
Transcription unit        Promoter
yciK-btuR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1704 (cluster) 1326918 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1705 1326921 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1706 1326973 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1707 1326992 forward nd [RS-EPT-CBR] [1]
  promoter TSS_1708 1327047 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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