RegulonDB RegulonDB 10.9: Gene Form
   

yihM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yihN yihM yihL TSS_4578 TSS_4578 yihNp5 yihNp5

Gene      
Name: yihM    Texpresso search in the literature
Synonym(s): ECK3866, EG11839, b3873
Genome position(nucleotides): 4061165 --> 4062145 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.93
External database links:  
ASAP:
ABE-0012653
ECHOBASE:
EB1785
ECOLIHUB:
yihM
OU-MICROARRAY:
b3873
STRING:
511145.b3873
COLOMBOS: yihM


Product      
Name: putative TIM barrel domain-containing protein YihM
Synonym(s): YihM
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 36.942
Isoelectric point: 4.952
Motif(s):
 
Type Positions Sequence
43 -> 238 IASENNLRGVKIHVLDGERFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYEGNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFANMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12494N
ECOCYC:
EG11839-MONOMER
ECOLIWIKI:
b3873
INTERPRO:
IPR013022
INTERPRO:
IPR036237
MODBASE:
P32134
PFAM:
PF01261
PRIDE:
P32134
REFSEQ:
NP_418309
UNIPROT:
P32134


Operon      
Name: yihLM         
Operon arrangement:
Transcription unit        Promoter
yihLM


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yihNp5 4062166 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_4578 4063038 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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