RegulonDB RegulonDB 10.9: Gene Form
   

opgH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

opgH opgG opgC yceK terminator anti-terminator anti-anti-terminator TSS_1330 TSS_1330 TSS_1329 (cluster) TSS_1329 (cluster) TSS_1328 TSS_1328 opgGp1 opgGp1 opgGp2 opgGp2

Gene      
Name: opgH    Texpresso search in the literature
Synonym(s): ECK1035, EG11886, b1049, mdoA, mdoH
Genome position(nucleotides): 1110863 --> 1113406 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.95
External database links:  
ASAP:
ABE-0003560
CGSC:
31852
ECHOBASE:
EB1832
ECOLIHUB:
mdoH
OU-MICROARRAY:
b1049
STRING:
511145.b1049
COLOMBOS: opgH


Product      
Name: osmoregulated periplasmic glucans (OPGs) biosynthesis protein H
Synonym(s): MdoA, MdoH, OPG glycosyltransferase, OpgH
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 96.937
Isoelectric point: 8.843
Motif(s):
 
Type Positions Sequence
194 -> 214 ILILFAVLFCWVSAGFWTALM
603 -> 625 VTLSLLLEVLFSVLLAPVRMLFH
680 -> 700 FLFWLAPIVFSLILSPFVSVI
19 -> 19 A
289 -> 289 P

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.1 - osmotic pressure
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0016757 - transferase activity, transferring glycosyl groups
GO:0016758 - transferase activity, transferring hexosyl groups
GO:0016740 - transferase activity
biological_process GO:0009250 - glucan biosynthetic process
GO:0051274 - beta-glucan biosynthetic process
Note(s): Note(s): ...[more].
Evidence: [IE] Inferred from experiment
Reference(s): [1] Debarbieux L., et al., 1997
External database links:  
ECOCYC:
EG11886-MONOMER
ECOLIWIKI:
b1049
INTERPRO:
IPR029044
INTERPRO:
IPR023725
INTERPRO:
IPR001173
MODBASE:
P62517
PFAM:
PF00535
PRIDE:
P62517
PRODB:
PRO_000023181
REFSEQ:
NP_415567
UNIPROT:
P62517


Operon      
Name: opgGH         
Operon arrangement:
Transcription unit        Promoter
mdoGH
mdoGH
mdoGH


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1328 1110128 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1329 (cluster) 1110416 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_1330 1111377 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Debarbieux L., Bohin A., Bohin JP., 1997, Topological analysis of the membrane-bound glucosyltransferase, MdoH, required for osmoregulated periplasmic glucan synthesis in Escherichia coli., J Bacteriol 179(21):6692-8

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB