RegulonDB RegulonDB 11.1: Gene Form
   

nrfD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nrfE nrfD nrfC nrfB nrfF

Gene      
Name: nrfD    Texpresso search in the literature
Synonym(s): ECK4066, EG11947, b4073, yjcK
Genome position(nucleotides): 4290476 --> 4291432
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 57.58
External database links:  
ASAP:
 ABE-0013348
CGSC:
 34355
ECHOBASE:
 EB1890
ECOLIHUB:
 nrfD
OU-MICROARRAY:
 b4073
STRING:
 511145.b4073
COLOMBOS: nrfD


Product      
Name: putative menaquinol-cytochrome c reductase subunit NrfD
Synonym(s): NrfD, YjcK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 35.042
Isoelectric point: 10.292
Motif(s):
 
Type Positions Sequence Comment
5 -> 318 SAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
18 -> 38 IAIYLFLIGISAGLVTLAVLL UniProt: Helical.
57 -> 73 LIVGPGAVILGLLILVF UniProt: Helical.
90 -> 112 FTSVMSMGVMLFQLYMVVLVLWL UniProt: Helical.
141 -> 141 L UniProt: In Ref. 1; CAA51044..

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.3 - energy metabolism, carbon --> 1.3.7 - anaerobic respiration
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0019645 - anaerobic electron transport chain
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P32709
ECOCYC:
 NRFD-MONOMER
ECOLIWIKI:
 b4073
INTERPRO:
 IPR017566
INTERPRO:
 IPR005614
PFAM:
 PF03916
PRIDE:
 P32709
PRODB:
 PRO_000023414
REFSEQ:
 NP_418497
UNIPROT:
 P32709


Operon      
Name: nrfABCDEFG         
Operon arrangement:
Transcription unit        Promoter
nrfABCDEFG


Transcriptional Regulation      
Display Regulation             
Activated by: FNR, IHF, NarL, NarP, FlhDC
Repressed by: NsrR, IHF, NarL, Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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