RegulonDB RegulonDB 10.9: Gene Form
   

alsC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

alsA alsC alsB alsE alsK alsEp3 alsEp3 alsEp2 alsEp2 alsKp1 alsKp1

Gene      
Name: alsC    Texpresso search in the literature
Synonym(s): ECK4079, EG11958, b4086, yjcV
Genome position(nucleotides): 4308489 <-- 4309469 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.5
External database links:  
ASAP:
ABE-0013392
ECHOBASE:
EB1901
ECOLIHUB:
alsC
ECOO157CYC:
Z0418
ECOO157CYC:
Z0419
ECOO157CYC:
Z5690
OU-MICROARRAY:
b4086
STRING:
511145.b4086
COLOMBOS: alsC


Product      
Name: D-allose ABC transporter membrane subunit
Synonym(s): AlsC, YjcV
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.316
Isoelectric point: 9.311
Motif(s):
 
Type Positions Sequence
71 -> 91 FFAILVAGIDLSVGAILALSG
279 -> 299 IFSVVIGGLIIGTINNGLNIL
300 -> 320 QVQTYYQLVVMGGLIIAAVAL
53 -> 317 ITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAA
150 -> 170 LVISDANSVYGFSFDFVNFFA

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0022857 - transmembrane transporter activity
GO:0015593 - allose transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0015754 - allose transmembrane transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
YJCV-MONOMER
ECOLIWIKI:
b4086
ECOO157CYC:
Z5690-MONOMER
ECOO157CYC:
Z0418-MONOMER
ECOO157CYC:
Z0419-MONOMER
INTERPRO:
IPR001851
PFAM:
PF02653
PRIDE:
P32720
PRODB:
PRO_000022089
REFSEQ:
NP_418510
UNIPROT:
P32720


Operon      
Name: alsRBACE         
Operon arrangement:
Transcription unit        Promoter
alsRBACE
alsRBACE
alsBACE


Transcriptional Regulation      
Display Regulation             
Repressed by: AlsR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter alsKp1 4307995 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter alsEp2 4308664 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter alsEp3 4308667 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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