RegulonDB RegulonDB 10.9: Gene Form
   

fliR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fliR rcsA fliQ RcsAB RcsAB rcsAp rcsAp

Gene      
Name: fliR    Texpresso search in the literature
Synonym(s): ECK1948, EG11977, b1950, flaP
Genome position(nucleotides): 2022893 --> 2023678 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.46
External database links:  
ASAP:
ABE-0006479
CGSC:
761
ECHOBASE:
EB1920
ECOLIHUB:
fliR
OU-MICROARRAY:
b1950
STRING:
511145.b1950
COLOMBOS: fliR


Product      
Name: flagellar biosynthesis protein FliR
Synonym(s): FlaP, FliR
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,cell projection
Molecular weight: 28.543
Isoelectric point: 6.084
Motif(s):
 
Type Positions Sequence
14 -> 246 NLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE
45 -> 65 GLAMMITFAIAPSLPANDVPV
223 -> 223 T
235 -> 255 LIAPFCEHLFSEIFNLLADII
90 -> 110 FAFAAVRTAGEIIGLQMGLSF

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.4 - flagella
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
GO:0009288 - bacterial-type flagellum
GO:0009425 - bacterial-type flagellum basal body
biological_process GO:0006605 - protein targeting
GO:0044780 - bacterial-type flagellum assembly
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11977-MONOMER
ECOLIWIKI:
b1950
INTERPRO:
IPR006303
INTERPRO:
IPR002010
PANTHER:
PTHR30065
PANTHER:
PTHR30065:SF1
PFAM:
PF01311
PRIDE:
P33135
PRINTS:
PR00953
PRODB:
PRO_000022667
REFSEQ:
NP_416460
UNIPROT:
P33135


Operon      
Name: fliLMNOPQR         
Operon arrangement:
Transcription unit        Promoter
fliLMNOPQR
fliLMNOPQR


Transcriptional Regulation      
Display Regulation             
Activated by: FlhDC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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