RegulonDB RegulonDB 11.1: Gene Form
   

wbbI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

wbbH wbbK wbbI wbbJ TSS_2387 TSS_2387 TSS_2386 TSS_2386 TSS_2385 TSS_2385 TSS_2384 TSS_2384 TSS_2383 TSS_2383 wbbKp4 wbbKp4 TSS_2382 TSS_2382 TSS_2381 TSS_2381

Gene      
Name: wbbI    Texpresso search in the literature
Synonym(s): ECK2028, EG11983, b2034, yefG
Genome position(nucleotides): 2105065 <-- 2106057
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 35.95
External database links:  
ASAP:
 ABE-0006751
ECHOBASE:
 EB1926
ECOLIHUB:
 wbbI
OU-MICROARRAY:
 b2034
STRING:
 511145.b2034
COLOMBOS: wbbI


Product      
Name: β-1,6-galactofuranosyltransferase WbbI
Synonym(s): WbbI, YefG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 37.757
Isoelectric point: 6.173
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide --> 1.6.3.1 - O antigen
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0008921 - lipopolysaccharide-1,6-galactosyltransferase activity
GO:0016740 - transferase activity
biological_process GO:0009103 - lipopolysaccharide biosynthetic process
Note(s): Note(s): ...[more].
Reference(s): [1] Roy B., et al., 2009
External database links:  
ALPHAFOLD:
 P37749
ECOCYC:
 EG11983-MONOMER
ECOLIWIKI:
 b2034
PRIDE:
 P37749
REFSEQ:
 NP_416538
UNIPROT:
 P37749


Operon      
Name: wbbIJK         
Operon arrangement:
Transcription unit        Promoter
wbbIJK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2381 2103462 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2382 2103479 reverse nd [RS-EPT-CBR] [2]
  promoter wbbKp4 2104606 reverse nd [COMP-AINF] [3]
  promoter TSS_2383 2105007 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2384 2105046 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2385 2105457 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2386 2106618 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2387 2106661 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Roy B., Field RA., Mukhopadhyay B., 2009, Synthesis of a tetrasaccharide related to the repeating unit of the O-antigen from Escherichia coli K-12., Carbohydr Res 344(17):2311-6

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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