RegulonDB RegulonDB 10.9: Gene Form
   

ucpA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cysP murR ucpA CysB TSS_2743 TSS_2743 ucpAp2 ucpAp2 ucpAp1 ucpAp1 cysPp cysPp

Gene      
Name: ucpA    Texpresso search in the literature
Synonym(s): ECK2421, EG12133, b2426, yfeF
Genome position(nucleotides): 2543832 <-- 2544623 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.3
External database links:  
ASAP:
ABE-0007996
ECHOBASE:
EB2054
ECOLIHUB:
ucpA
OU-MICROARRAY:
b2426
STRING:
511145.b2426
COLOMBOS: ucpA


Product      
Name: oxidoreductase UcpA
Synonym(s): UcpA, YfeF
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 27.85
Isoelectric point: 4.889
Motif(s):
 
Type Positions Sequence
153 -> 153 T
13 -> 254 GALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGST
10 -> 32 LITGALQGIGEGIARTFARHGAN

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)  
molecular_function GO:0052588 - diacetyl reductase ((S)-acetoin forming) activity
GO:0005515 - protein binding
GO:0016491 - oxidoreductase activity
biological_process GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11073N
ECOCYC:
EG12133-MONOMER
ECOLIWIKI:
b2426
INTERPRO:
IPR036291
INTERPRO:
IPR002347
MODBASE:
P37440
PFAM:
PF13561
PRIDE:
P37440
PRINTS:
PR00080
PRINTS:
PR00081
PRODB:
PRO_000024161
REFSEQ:
NP_416921
SMR:
P37440
UNIPROT:
P37440


Operon      
Name: ucpA         
Operon arrangement:
Transcription unit        Promoter
ucpA
ucpA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2743 2544672 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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